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GitHub / bioinfo-pf-curie / as-mapping
Nextflow pipeline for Allele-specific analysis
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioinfo-pf-curie%2Fas-mapping
Stars: 0
Forks: 0
Open Issues: 0
License: other
Language: Nextflow
Repo Size: 336 MB
Dependencies:
15
Created: almost 4 years ago
Updated: over 3 years ago
Last pushed: over 3 years ago
Last synced: over 1 year ago
Files
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Readme
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Dependencies
environment.yml
conda
- bowtie2 2.2.5.*
- deeptools 3.2.1.*
- fastqc 0.11.8.*
- hisat2 2.1.0.*
- multiqc 1.8.*
- picard 2.19.0.*
- pymdown-extensions 7.1.*
- pysam 0.15.4.*
- python 3.7.6.*
- r-markdown 0.8.*
- samtools 1.9.*
- snpsplit 0.3.4.*
- star 2.7.4a.*
- subread 1.6.2.*
- trim-galore 0.6.2.*