Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub / bouralab / Prop3D

A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cleaned" domain structure in CATH.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bouralab%2FProp3D

Stars: 23
Forks: 4
Open Issues: 1

License: cc0-1.0
Language: Python
Repo Size: 265 MB
Dependencies: 21

Created: over 6 years ago
Updated: 2 months ago
Last pushed: 6 months ago
Last synced: 26 days ago

Files

Readme

Dependencies

requirements.txt pypi

Biopython *
Toil *
awscli *
botocore *
cloudpickle >=0.2.1
dask *
freesasa *
h5py *
h5pyd *
joblib *
numpy *
pandas *
partd >=0.3.8
scikit-learn *
seaborn *
spython *
tables *
toolz >=0.7.3
tornado *
tqdm *

Docker/Dockerfile docker

quay.io/ucsc_cgl/toil 5.5.0 build