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GitHub / brainglobe / cellfinder
Automated 3D cell detection in very large images
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fcellfinder
Stars: 170
Forks: 38
Open Issues: 82
License: bsd-3-clause
Language: Python
Repo Size: 167 MB
Dependencies:
24
Created: over 4 years ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
Commit Stats
Commits: 313
Authors: 12
Mean commits per author: 26.08
Development Distribution Score: 0.323
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/brainglobe/cellfinder
Topics: cell-detection, deep-learning, image-analysis, imaging, microscopy, neuroanatomy, neuroscience, python
Files
Dependencies
- actions/checkout v2 composite
- actions/setup-python v1 composite
- brainglobe/actions/lint v1 composite
- brainglobe/actions/test v1 composite
- docker/build-push-action ad44023a93711e3deb337508980b4b5e9bcdc5dc composite
- docker/login-action f054a8b539a109f9f41c372932f1ae047eff08c9 composite
- docker/metadata-action 98669ae865ea3cffbcbaa878cf57c20bbf1c6c38 composite
- brainglobe-utils >=0.2.5
- brainreg *
- cellfinder-core >=0.2.4
- configobj *
- fancylog >=0.0.7
- imio *
- multiprocessing-logging >=0.3.4
- natsort *
- numpy *
- packaging *
- pandas *
- scikit-image *
- tifffile *
- tqdm *
- actions/checkout v3 composite
- actions/setup-python v4 composite
- jannekem/run-python-script-action v1 composite