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GitHub / cbg-ethz / covvfit

Fitness estimates of SARS-CoV-2 variants

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fcovvfit

Stars: 0
Forks: 0
Open Issues: 1

License: mit
Language: Python
Repo Size: 1.46 MB
Dependencies: 33

Created: 7 months ago
Updated: 21 days ago
Last pushed: 21 days ago
Last synced: 4 days ago

Topics: bayesian-statistics, epidemiology, fitness-landscape, sars-cov-2

Files

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Readme

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Dependencies

.github/workflows/docs.yml actions

actions/cache v2 composite
actions/checkout v3 composite
actions/setup-python v4 composite
snok/install-poetry v1 composite

.github/workflows/test.yml actions

actions/cache v2 composite
actions/checkout v3 composite
actions/setup-python v4 composite
psf/black stable composite
snok/install-poetry v1 composite

pyproject.toml pypi

matplotlib ^3.8.0
numpy ^1.25
pymc ^5.9.1
python >=3.10,<3.12
scipy ^1.11.3

environment.yml conda

arviz 0.16.1.*
matplotlib-base 3.8.0.*
numpy 1.25.2.*
pandas 2.1.2.*
pip 23.3.1.*
pymc 5.9.1.*
pymc-base 5.9.1.*
pytensor 2.17.3.*
pytensor-base 2.17.3.*
pytest 7.4.3.*
python 3.10.13.*
pyyaml 6.0.1.*
scipy 1.11.3.*
setuptools 68.2.2.*
snakemake 7.32.4.*
snakemake-minimal 7.32.4.*
xarray 2023.10.1.*
xarray-einstats 0.6.0.*
yaml 0.2.5.*