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GitHub / cyverse-vice / snakemake-vice
VICE jupyter lab with snakemake-minimal
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cyverse-vice%2Fsnakemake-vice
Stars: 1
Forks: 1
Open Issues: 0
License: mit
Language: Dockerfile
Repo Size: 12.7 KB
Dependencies:
22
Created: about 4 years ago
Updated: about 4 years ago
Last pushed: about 4 years ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
environment.yml
conda
- bedtools 2.29.2.*
- bioconductor-geoquery 2.54.0.*
- bioconductor-rtracklayer 1.46.0.*
- bowtie2 2.3.5.1.*
- fastqc 0.11.9.*
- graphviz 2.42.3.*
- htseq 0.11.2.*
- multiqc 1.7.*
- python 3.7.6.*
- r-base 3.6.2.*
- r-ggplot2 3.2.1.*
- r-pheatmap 1.0.12.*
- r-reshape2 1.4.3.*
- r-rmarkdown 2.1.*
- r-stringi 1.4.5.*
- samtools 1.10.*
- snakemake-minimal 5.10.0.*
- sra-tools 2.10.1.*
- wget 1.20.1.*
- xorg-libxpm
- xorg-libxrender
Dockerfile
docker
- jupyter/scipy-notebook latest build