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GitHub / daniel235 / RNAmodificationClassifier

classifier to detect the pseudouridine modification in a RNA sequence using nanopore sequencer data.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daniel235%2FRNAmodificationClassifier

Stars: 0
Forks: 0
Open Issues: 17

License: None
Language: Python
Repo Size: 3.76 MB
Dependencies: 109

Created: over 4 years ago
Updated: over 3 years ago
Last pushed: over 1 year ago
Last synced: over 1 year ago

Files

Readme

Dependencies

requirements.txt pypi

Click ==7.0
Flask ==1.0.2
Jinja2 ==2.10
Keras ==2.3.1
Keras-Applications ==1.0.8
Keras-Preprocessing ==1.1.0
Markdown ==2.6.11
MarkupSafe ==1.1.0
Pillow ==5.2.0
Pint ==0.8.1
PyWavelets ==1.0.1
PyYAML ==3.13
Werkzeug ==0.14.1
absl-py ==0.4.1
argh ==0.26.2
astor ==0.7.1
astroid ==2.1.0
astropy ==3.1.2
atomicwrites ==1.3.0
attrs ==19.1.0
cachetools ==3.1.0
certifi ==2019.6.16
chardet ==3.0.4
cloudpickle ==1.2.2
colorama ==0.4.1
cycler ==0.10.0
dask ==0.20.2
dataclasses ==0.6
decorator ==4.4.0
deepdiff ==4.0.6
future ==0.18.2
gast ==0.2.0
gcloud ==0.18.3
google-api-core ==1.9.0
google-auth ==1.6.3
google-cloud-bigquery ==1.11.2
google-cloud-core ==0.29.1
google-cloud-storage ==1.15.0
google-resumable-media ==0.3.2
googleapis-common-protos ==1.5.9
grpcio ==1.14.2
gym ==0.15.4
h5py ==2.10.0
httplib2 ==0.12.3
idna ==2.8
importlib-metadata ==0.18
isort ==4.3.4
itsdangerous ==1.1.0
jenkspy ==0.1.5
jsonpickle ==1.2
kiwisolver ==1.0.1
lazy-object-proxy ==1.3.1
matplotlib ==2.2.3
mccabe ==0.6.1
mkl-fft ==1.0.10
mkl-random ==1.0.2
more-itertools ==4.3.0
networkx ==2.3
numpy ==1.16.2
oauth2client ==4.1.3
ont-fast5-api ==3.0.0
opencv-python ==4.1.2.30
ordered-set ==3.1.1
packaging ==19.0
pandas ==0.23.4
pathtools ==0.1.2
pickle-mixin ==1.0.2
plotly ==4.0.0
pluggy ==0.12.0
progressbar33 ==2.4
protobuf ==3.6.0
psutil ==5.6.3
py ==1.8.0
pyasn1 ==0.4.5
pyasn1-modules ==0.2.5
pydantic ==0.23
pygame ==1.9.4
pyglet ==1.3.2
pylint ==2.2.2
pyparsing ==2.4.0
pytest ==4.6.3
python-dateutil ==2.7.3
pytz ==2018.5
qcelemental ==0.4.1
quotes ==0.0.3
requests ==2.21.0
retrying ==1.3.3
rsa ==4.0
scikit-image ==0.14.1
scikit-learn ==0.20.0
scipy ==1.1.0
seaborn ==0.9.0
six ==1.12.0
sklearn ==0.0
style ==1.1.0
tensorboard ==1.9.0
tensorflow ==1.9.0
termcolor ==1.1.0
toolz ==0.9.0
typed-ast ==1.3.1
update ==0.0.1
urllib3 ==1.24.2
watchdog ==0.9.0
wcwidth ==0.1.7
wincertstore ==0.2
wrapt ==1.11.1
xlrd ==1.2.0
xlwt ==1.3.0
zipp ==0.5.1