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GitHub / dms-vep / flu_h3_hk19_dms
Analysis of a multi-mutant, barcoded influenza H3 library in the A/HongKong/45/2019 background.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/dms-vep%2Fflu_h3_hk19_dms
Stars: 0
Forks: 0
Open Issues: 1
License: None
Language: Jupyter Notebook
Repo Size: 1020 MB
Dependencies:
32
Created: almost 2 years ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
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Dependencies
environment.yml
conda
- biopython 1.79.*
- black-jupyter
- bs4 4.11.*
- entrez-direct 16.2.*
- flake8
- flake8-bugbear
- flake8-builtins
- flake8-comprehensions
- flake8-import-order
- flake8-nb
- git-lfs
- graphviz
- jupyterlab
- mafft 7.505.*
- mamba
- markdown 3.3.*
- matplotlib 3.5.*
- minimap2 2.24.*
- nbdime
- nbsphinx 0.8.*
- nbsphinx-link 1.3.*
- nbstripout
- openpyxl
- pandas 1.5.*
- papermill 2.3.*
- pip
- python 3.10.*
- snakefmt
- snakemake 7.8.1.*
- sphinx 4.3.*
- tabulate <0.9
- upsetplot 0.6.*