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GitHub / duerrsimon / mars-biohackathon
Predicting thermostability using a VAE and prediction from the latent space.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/duerrsimon%2Fmars-biohackathon
Stars: 6
Forks: 2
Open Issues: 0
License: mit
Language: HTML
Repo Size: 33.5 MB
Dependencies:
155
Created: about 3 years ago
Updated: over 2 years ago
Last pushed: about 3 years ago
Last synced: about 1 year ago
Topics: deep-learning, proteins, thermostability
Files
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Readme
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Dependencies
environment.yml
pypi
- aiohttp ==3.7.4.post0
- alabaster ==0.7.12
- alembic ==1.5.8
- appdirs ==1.4.4
- async-timeout ==3.0.1
- attrs ==20.3.0
- babel ==2.9.0
- bio-embeddings ==0.1.7
- bio-embeddings-allennlp ==0.9.1
- bio-embeddings-bepler ==0.0.1
- bio-embeddings-cpcprot ==0.0.1
- bio-embeddings-deepblast ==0.1.0
- bio-embeddings-plus ==0.1.1
- bio-embeddings-tape-proteins ==0.4
- biopython ==1.78
- blis ==0.7.4
- boto3 ==1.17.57
- botocore ==1.20.57
- cached-property ==1.5.2
- cachetools ==4.2.1
- catalogue ==1.0.0
- chardet ==4.0.0
- click ==7.1.2
- cliff ==3.7.0
- cmaes ==0.8.2
- cmd2 ==1.5.0
- colorama ==0.4.4
- colorlog ==5.0.1
- conllu ==4.4
- cycler ==0.10.0
- cymem ==2.0.5
- docutils ==0.16
- editdistance ==0.5.3
- fair-esm ==0.3.1
- filelock ==3.0.12
- flaky ==3.7.0
- flask ==1.1.2
- flask-cors ==3.0.10
- fsspec ==2021.4.0
- ftfy ==6.0.1
- future ==0.18.2
- gensim ==3.8.3
- gevent ==21.1.2
- google-auth ==1.29.0
- google-auth-oauthlib ==0.4.4
- greenlet ==1.0.0
- grpcio ==1.37.0
- h5py ==3.2.1
- humanize ==3.4.1
- idna ==2.10
- imagesize ==1.2.0
- importlib-metadata ==1.7.0
- iniconfig ==1.1.1
- itsdangerous ==1.1.0
- jax ==0.1.77
- jax-unirep ==1.0.3
- jinja2 ==2.11.3
- jmespath ==0.10.0
- joblib ==1.0.1
- jsonnet ==0.17.0
- jsonpickle ==2.0.0
- kiwisolver ==1.3.1
- llvmlite ==0.36.0
- lmdb ==1.2.1
- lock ==2018.3.25.2110
- mako ==1.1.4
- markdown ==3.3.4
- markupsafe ==1.1.1
- matplotlib ==3.4.1
- multidict ==5.1.0
- multipledispatch ==0.6.0
- murmurhash ==1.0.5
- nltk ==3.6.2
- numba ==0.53.1
- numpy ==1.20.2
- numpydoc ==1.1.0
- oauthlib ==3.1.0
- opt-einsum ==3.3.0
- optuna ==2.7.0
- overrides ==4.1.1
- packaging ==20.9
- pandas ==1.2.4
- parsimonious ==0.8.1
- pbr ==5.5.1
- plac ==1.1.3
- pluggy ==0.13.1
- preshed ==3.0.5
- prettytable ==2.1.0
- protobuf ==3.15.8
- py ==1.10.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pygments ==2.8.1
- pynndescent ==0.5.2
- pyparsing ==2.4.7
- pyperclip ==1.8.2
- pytest ==6.2.3
- python-dateutil ==2.8.1
- python-editor ==1.0.4
- python-slugify ==4.0.1
- pytorch-lightning ==1.2.10
- pytorch-pretrained-bert ==0.6.2
- pytorch-transformers ==1.1.0
- pytz ==2021.1
- pyyaml ==5.3.1
- regex ==2021.4.4
- requests ==2.25.1
- requests-oauthlib ==1.3.0
- responses ==0.13.2
- retrying ==1.3.3
- rsa ==4.7.2
- ruamel-yaml ==0.16.13
- ruamel-yaml-clib ==0.2.2
- s3transfer ==0.4.2
- sacremoses ==0.0.45
- scikit-learn ==0.24.1
- sentencepiece ==0.1.95
- smart-open ==5.0.0
- snowballstemmer ==2.1.0
- spacy ==2.3.5
- sphinx ==3.5.4
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==1.0.3
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.4
- sqlalchemy ==1.4.11
- sqlparse ==0.4.1
- srsly ==1.0.5
- stevedore ==3.3.0
- tensorboard ==2.4.1
- tensorboard-plugin-wit ==1.8.0
- tensorboardx ==2.2
- text-unidecode ==1.3
- thinc ==7.4.5
- threadpoolctl ==2.1.0
- tokenizers ==0.10.2
- toml ==0.10.2
- torch ==1.7.1
- torchmetrics ==0.2.0
- tqdm ==4.60.0
- transformers ==4.5.1
- typing-utils ==0.0.3
- umap-learn ==0.5.1
- unidecode ==1.2.0
- urllib3 ==1.26.4
- wasabi ==0.8.2
- wcwidth ==0.2.5
- werkzeug ==1.0.1
- word2number ==1.1
- yarl ==1.6.3
- zipp ==3.4.1
- zope-event ==4.5.0
- zope-interface ==5.4.0