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GitHub / fulcrumgenomics / python-snakemake-skeleton

A skeleton repository for Snakemake pipepline(s) and a python command-line toolkit.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fulcrumgenomics%2Fpython-snakemake-skeleton

Stars: 26
Forks: 0
Open Issues: 13

License: mit
Language: Python
Repo Size: 62.5 KB
Dependencies: 14

Created: about 2 years ago
Updated: about 1 year ago
Last pushed: about 1 month ago
Last synced: 30 days ago

Funding links: https://github.com/sponsors/fulcrumgenomics

Files

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Readme

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Dependencies

conda-requirements-minimal.txt pypi

attrs =19.3.0
defopt =6.0.2
python =3.6.10
samwell ==0.0.2
snakemake-minimal =5.11.1
typing_extensions =4.1.1

conda-requirements-test.txt pypi

black ==19.10b0 test
flake8 ==3.7.9 test
mypy ==0.761 test
pytest ==5.3.5 test

pip-requirements.txt pypi

distutils-strtobool ==0.1.0

.github/workflows/pythonpackage.yml actions

actions/checkout v2 composite
actions/setup-python v1 composite
conda-incubator/setup-miniconda v2 composite

setup.py pypi