GitHub / gmboowa / rMAP-2.0
This tool provides a ready-to-use WDL-Docker-Cromwell environment for rMAP, a bioinformatics pipeline for analyzing microbial genomic data, Genome assembly & profiling Resistome, Mobilome & Virulome as well Pangenome & MLST typing, Blastn & Phylogenetic analysis. It includes all required tools, enabling reproducible & scalable analysis of NGS data
JSON API: http://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gmboowa%2FrMAP-2.0
PURL: pkg:github/gmboowa/rMAP-2.0
Stars: 1
Forks: 0
Open issues: 0
License: None
Language: WDL
Size: 14.8 MB
Dependencies parsed at: Pending
Created at: 2 months ago
Updated at: 12 days ago
Pushed at: 12 days ago
Last synced at: 12 days ago
Topics: cromwell, docker, eskapee, insertation-sequences, microbial-genomics, mlst-typing, mobilome, phylogenetic-analysis, plasmids, resistome, rmap, variant-calling, virulome, wdl-workflow