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GitHub / hannshu / stCluster
Accurate spatial domain deciphering for spatially resolved transcriptomics with stCluster
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hannshu%2FstCluster
Stars: 2
Forks: 1
Open Issues: 0
License: mit
Language: Python
Repo Size: 27.2 MB
Dependencies:
104
Created: 9 months ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Topics: bioinformatics, clustering, spatial-transcriptomics
Files
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Readme
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Dependencies
environment.yml
pypi
- aiobotocore ==2.5.1
- aiohttp ==3.8.4
- aioitertools ==0.11.0
- aiosignal ==1.3.1
- anndata ==0.9.1
- asciitree ==0.3.3
- async-timeout ==4.0.2
- botocore ==1.29.161
- click ==8.1.3
- click-plugins ==1.1.1
- cligj ==0.7.2
- cloudpickle ==2.2.1
- colorcet ==3.0.1
- contourpy ==1.1.0
- cycler ==0.11.0
- dask ==2023.6.1
- dask-image ==2023.3.0
- datashader ==0.15.0
- datashape ==0.5.2
- distributed ==2023.6.1
- docrep ==0.3.2
- fasteners ==0.18
- fiona ==1.9.4.post1
- fonttools ==4.40.0
- frozenlist ==1.3.3
- fsspec ==2023.6.0
- geopandas ==0.13.2
- h5py ==3.9.0
- igraph ==0.10.4
- imageio ==2.31.1
- importlib-resources ==5.12.0
- inflect ==6.0.4
- jmespath ==1.0.1
- joblib ==1.3.1
- kiwisolver ==1.4.4
- lazy-loader ==0.2
- leidenalg ==0.9.1
- llvmlite ==0.40.1
- locket ==1.0.0
- louvain ==0.8.0
- markdown-it-py ==3.0.0
- matplotlib ==3.7.1
- matplotlib-scalebar ==0.8.1
- mdurl ==0.1.2
- msgpack ==1.0.5
- multidict ==6.0.4
- multipledispatch ==1.0.0
- multiscale-spatial-image ==0.11.2
- natsort ==8.4.0
- numba ==0.57.1
- numcodecs ==0.11.0
- numpy ==1.23.4
- ome-zarr ==0.7.1
- omnipath ==1.0.7
- pandas ==2.0.3
- param ==1.13.0
- partd ==1.4.0
- patsy ==0.5.3
- pims ==0.6.1
- pyarrow ==12.0.1
- pyct ==0.5.0
- pydantic ==1.10.9
- pygeos ==0.14
- pynndescent ==0.5.10
- pyparsing ==3.1.0
- pyproj ==3.6.0
- pywavelets ==1.4.1
- rich ==13.4.2
- rpy2 ==3.5.13
- s3fs ==2023.6.0
- scanpy ==1.9.3
- scikit-image ==0.20.0
- scikit-learn ==1.2.2
- scikit-misc ==0.2.0
- scipy ==1.9.1
- seaborn ==0.12.2
- session-info ==1.0.0
- shapely ==2.0.1
- slicerator ==1.1.0
- sortedcontainers ==2.4.0
- spatial-image ==0.3.0
- spatialdata ==0.0.12
- squidpy ==1.3.0
- statsmodels ==0.14.0
- stdlib-list ==0.9.0
- tblib ==2.0.0
- texttable ==1.6.7
- threadpoolctl ==3.1.0
- tifffile ==2023.4.12
- toolz ==0.12.0
- typing-extensions ==4.5.0
- tzdata ==2023.3
- tzlocal ==5.0.1
- umap-learn ==0.5.3
- validators ==0.20.0
- wrapt ==1.15.0
- xarray ==2022.12.0
- xarray-dataclasses ==1.6.0
- xarray-datatree ==0.0.12
- xarray-schema ==0.0.3
- xarray-spatial ==0.3.7
- yarl ==1.9.2
- zarr ==2.15.0
- zict ==3.0.0