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GitHub / holmrenser / jupyterhub_conda_docker
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/holmrenser%2Fjupyterhub_conda_docker
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Dockerfile
Repo Size: 9.77 KB
Dependencies:
40
Created: over 1 year ago
Updated: 2 months ago
Last pushed: over 1 year ago
Last synced: 2 months ago
Files
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Readme
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Dependencies
- bbmap ==38.98
- blobtools ==1.1.1
- bowtie2 ==2.4.5
- bwa ==0.7.17
- bwa-mem2 ==2.2.1
- cat ==5.2.3
- checkm-genome ==1.2.1
- coverm ==0.6.1
- das_tool ==1.1.4
- diamond ==2.0.15
- eggnog-mapper ==2.1.9
- fastp ==0.23.2
- gtdbtk ==1.7.0
- hmmer ==3.1b2
- ipython *
- jupyter *
- jupyterhub *
- kaiju ==1.9.0
- kraken2 ==2.1.2
- maxbin2 ==2.2.7
- megahit ==1.2.9
- metabat2 ==2.12.1
- mmseqs2 ==13.45111
- multiqc ==1.13a
- numpy ==1.23.2
- pandas ==1.4.3
- prodigal ==2.6.3
- prokka ==1.13
- python ==3.10.6
- quast ==5.2.0
- samtools ==1.15.1
- scipy ==1.9.1
- seqtk ==1.3
- sourmash ==4.4.3
- spades ==3.15.3
- vsearch ==2.21.1
requirements.txt
pypi
- matplotlib ==3.1.0
- numpy *
- scipy *
Dockerfile
docker
- ubuntu 22.04 build