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GitHub / jbloomlab / SARS2-mut-spectrum
Mutational spectrum of SARS-CoV-2
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jbloomlab%2FSARS2-mut-spectrum
Stars: 4
Forks: 0
Open Issues: 0
License: None
Language: HTML
Repo Size: 11.8 MB
Dependencies:
112
Created: over 1 year ago
Updated: about 1 month ago
Last pushed: over 1 year ago
Last synced: about 1 month ago
Files
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Readme
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Dependencies
environment.yml
conda
- altair 4.2.*
- biopython 1.79.*
- entrez-direct 16.2.*
- git-lfs
- iqtree 2.2.*
- jupyter_contrib_nbextensions
- jupyterlab
- matplotlib
- pandas 1.4.*
- papermill 2.3.4.*
- python 3.9.*
- scikit-learn 1.1.1.*
- snakemake 7.18.*
- usher 0.5.6.*
docs/Gemfile
rubygems
- github-pages ~> 227 development
- jekyll-feed ~> 0.12 development
- minima ~> 2.5
- tzinfo ~> 1.2
- tzinfo-data >= 0
- wdm ~> 0.1.1
- webrick ~> 1.7
docs/Gemfile.lock
rubygems
- activesupport 6.0.6
- addressable 2.8.1
- coffee-script 2.4.1
- coffee-script-source 1.11.1
- colorator 1.1.0
- commonmarker 0.23.6
- concurrent-ruby 1.1.10
- dnsruby 1.61.9
- em-websocket 0.5.3
- ethon 0.15.0
- eventmachine 1.2.7
- execjs 2.8.1
- faraday 2.6.0
- faraday-net_http 3.0.1
- ffi 1.15.5
- forwardable-extended 2.6.0
- gemoji 3.0.1
- github-pages 227
- github-pages-health-check 1.17.9
- html-pipeline 2.14.2
- http_parser.rb 0.8.0
- i18n 0.9.5
- jekyll 3.9.2
- jekyll-avatar 0.7.0
- jekyll-coffeescript 1.1.1
- jekyll-commonmark 1.4.0
- jekyll-commonmark-ghpages 0.2.0
- jekyll-default-layout 0.1.4
- jekyll-feed 0.15.1
- jekyll-gist 1.5.0
- jekyll-github-metadata 2.13.0
- jekyll-include-cache 0.2.1
- jekyll-mentions 1.6.0
- jekyll-optional-front-matter 0.3.2
- jekyll-paginate 1.1.0
- jekyll-readme-index 0.3.0
- jekyll-redirect-from 0.16.0
- jekyll-relative-links 0.6.1
- jekyll-remote-theme 0.4.3
- jekyll-sass-converter 1.5.2
- jekyll-seo-tag 2.8.0
- jekyll-sitemap 1.4.0
- jekyll-swiss 1.0.0
- jekyll-theme-architect 0.2.0
- jekyll-theme-cayman 0.2.0
- jekyll-theme-dinky 0.2.0
- jekyll-theme-hacker 0.2.0
- jekyll-theme-leap-day 0.2.0
- jekyll-theme-merlot 0.2.0
- jekyll-theme-midnight 0.2.0
- jekyll-theme-minimal 0.2.0
- jekyll-theme-modernist 0.2.0
- jekyll-theme-primer 0.6.0
- jekyll-theme-slate 0.2.0
- jekyll-theme-tactile 0.2.0
- jekyll-theme-time-machine 0.2.0
- jekyll-titles-from-headings 0.5.3
- jekyll-watch 2.2.1
- jemoji 0.12.0
- kramdown 2.3.2
- kramdown-parser-gfm 1.1.0
- liquid 4.0.3
- listen 3.7.1
- mercenary 0.3.6
- minima 2.5.1
- minitest 5.16.3
- nokogiri 1.13.8
- octokit 4.25.1
- pathutil 0.16.2
- public_suffix 4.0.7
- racc 1.6.0
- rb-fsevent 0.11.2
- rb-inotify 0.10.1
- rexml 3.2.5
- rouge 3.26.0
- ruby2_keywords 0.0.5
- rubyzip 2.3.2
- safe_yaml 1.0.5
- sass 3.7.4
- sass-listen 4.0.0
- sawyer 0.9.2
- simpleidn 0.2.1
- terminal-table 1.8.0
- thread_safe 0.3.6
- typhoeus 1.4.0
- tzinfo 1.2.10
- unf 0.1.4
- unf_ext 0.0.8.2
- unicode-display_width 1.8.0
- webrick 1.7.0
- zeitwerk 2.6.1