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GitHub / lipingfangs / Panlineal

Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lipingfangs%2FPanlineal

Stars: 2
Forks: 0
Open Issues: 0

License: None
Language: Python
Repo Size: 10.6 MB
Dependencies: 0

Created: almost 4 years ago
Updated: 9 months ago
Last pushed: over 3 years ago
Last synced: 9 months ago

Topics: bowtie2, lastz, mummer, pipeline, samtools

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    Dependencies
    setup.py pypi