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GitHub / lumc-pgx / CCS-Amplicon
Create polished, phased allele sequences from PacBio amplicon data.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lumc-pgx%2FCCS-Amplicon
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Python
Repo Size: 111 KB
Dependencies:
26
Created: almost 5 years ago
Updated: almost 5 years ago
Last pushed: almost 5 years ago
Last synced: about 1 year ago
Files
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Dependencies
environment.yaml
conda
setup.py
pypi
- biopython *
- bokeh *
- click >=7.0
- edlib *
- markov_clustering >=0.0.5.dev0
- networkx >=2.0
- numpy *
- pandas *
- pygraphviz >=1.4rc1
- pysam *
- scikit-learn *
- snakemake >=5.0.0
- tqdm *