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GitHub / marcnol / pyHiM
Multiplexed DNA-FISH data analysis pipeline
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marcnol%2FpyHiM
Stars: 3
Forks: 2
Open Issues: 30
License: lgpl-3.0
Language: Python
Repo Size: 72.4 MB
Dependencies:
216
Created: about 4 years ago
Updated: about 2 months ago
Last pushed: 2 months ago
Last synced: 6 days ago
Commit Stats
Commits: 1088
Authors: 12
Mean commits per author: 90.67
Development Distribution Score: 0.36
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/marcnol/pyHiM
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Dependencies
- ipython *
- matplotlib >=3.1.3
- myst-parser >=0.17.0
- nbsphinx *
- numpy >=1.18.1
- numpydoc >=1.1.0
- scikit-image >=0.17.2
- sphinx >=3.3.1
- sphinx-book-theme *
- sphinx-panels >=0.6.0
- sphinx-rtd-theme >=0.5.2
- sphinxcontrib-mermaid >=0.7.1
pyproject.toml
pypi
- apifish >= 0.6.4.dev0
- astropy >= 4.3.1
- csbdeep >= 0.6.3
- dask [distributed] >= 2023.4.1
- dataclasses-json *
- matplotlib == 3.5.1
- numba >= 0.54.1
- numpy >= 1.19.5
- photutils >= 1.1.0
- pympler >= 1.0.1
- roipoly >= 0.5.3
- scikit-image == 0.19.2
- scikit-learn >= 1.1.1
- scipy >= 1.7.3
- stardist >= 0.7.3
- tifffile >= 2021.10.10
- tqdm >= 4.63.0
environment.yml
conda
- _libgcc_mutex 0.1
- _openmp_mutex 4.5
- alabaster 0.7.12
- appdirs 1.4.4
- asdf 2.8.3
- astropy 5.0
- attrs 21.4.0
- babel 2.9.1
- black 19.10b0
- blas 1.0
- blosc 1.21.0
- bokeh 2.4.2
- bottleneck 1.3.2
- brotli 1.0.9
- brotlipy 0.7.0
- brunsli 0.1
- bzip2 1.0.8
- c-ares 1.18.1
- ca-certificates 2022.10.11
- certifi 2022.12.7
- cffi 1.15.0
- cfitsio 3.470
- charls 2.2.0
- click 8.0.3
- cloudpickle 2.0.0
- colorama 0.4.4
- coverage 6.2
- cryptography 36.0.0
- cycler 0.11.0
- cytoolz 0.11.0
- dbus 1.13.18
- docutils 0.17.1
- expat 2.4.1
- fontconfig 2.13.1
- fonttools 4.25.0
- freetype 2.11.0
- fsspec 2022.1.0
- giflib 5.2.1
- glib 2.69.1
- gst-plugins-base 1.14.0
- gstreamer 1.14.0
- gwcs 0.17.1
- heapdict 1.0.1
- hypothesis 6.29.3
- icu 58.2
- idna 3.3
- imagecodecs 2021.8.26
- imageio 2.9.0
- imagesize 1.3.0
- importlib_metadata 4.8.2
- importlib_resources 5.2.0
- iniconfig 1.1.1
- intel-openmp 2021.4.0
- jinja2 3.0.2
- jmespath 0.10.0
- joblib 1.1.0
- jpeg 9d
- jsonschema 3.2.0
- jxrlib 1.1
- kiwisolver 1.3.1
- krb5 1.19.2
- lcms2 2.12
- ld_impl_linux-64 2.35.1
- lerc 3.0
- libaec 1.0.4
- libcurl 7.80.0
- libdeflate 1.8
- libedit 3.1.20210910
- libev 4.33
- libffi 3.3
- libgcc-ng 9.3.0
- libgfortran-ng 7.5.0
- libgfortran4 7.5.0
- libgomp 9.3.0
- libnghttp2 1.46.0
- libpng 1.6.37
- libssh2 1.9.0
- libstdcxx-ng 9.3.0
- libtiff 4.2.0
- libuuid 1.0.3
- libwebp 1.2.0
- libwebp-base 1.2.0
- libxcb 1.14
- libxml2 2.9.12
- libzopfli 1.0.3
- lz4-c 1.9.3
- markdown-it-py 2.0.1
- markupsafe 2.0.1
- matplotlib 3.5.0
- matplotlib-base 3.5.0
- mdit-py-plugins 0.3.0
- mdurl 0.1.0
- mkl 2021.4.0
- mkl-service 2.4.0
- mkl_fft 1.3.1
- mkl_random 1.2.2
- msgpack-python 1.0.2
- munkres 1.1.4
- mypy_extensions 0.4.3
- myst-parser 0.17.0
- ncurses 6.3
- networkx 2.6.3
- numexpr 2.8.1
- numpy 1.21.2
- numpy-base 1.21.2
- olefile 0.46
- openjpeg 2.4.0
- openssl 1.1.1s
- packaging 21.3
- pandas 1.3.5
- partd 1.2.0
- pathspec 0.7.0
- pcre 8.45
- photutils 1.1.0
- pillow 8.4.0
- pip 22.3.1
- pluggy 1.0.0
- psutil 5.8.0
- py 1.10.0
- pycparser 2.21
- pyerfa 2.0.0
- pygments 2.11.2
- pyopenssl 22.0.0
- pyparsing 3.0.4
- pyqt 5.9.2
- pyrsistent 0.18.0
- pysocks 1.7.1
- pytest 6.2.5
- pytest-arraydiff 0.3
- pytest-astropy 0.9.0
- pytest-astropy-header 0.1.2
- pytest-cov 3.0.0
- pytest-doctestplus 0.11.2
- pytest-filter-subpackage 0.1.1
- pytest-mock 3.6.1
- pytest-openfiles 0.5.0
- pytest-remotedata 0.3.3
- python 3.9.7
- python-dateutil 2.8.2
- python_abi 3.9
- pytz 2021.3
- pywavelets 1.1.1
- pyyaml 6.0
- qt 5.9.7
- readline 8.1.2
- regex 2021.11.2
- requests 2.27.1
- scikit-image 0.18.3
- scikit-learn 1.0.2
- scipy 1.7.3
- semantic_version 2.8.5
- setuptools 58.0.4
- sip 4.19.13
- six 1.16.0
- snappy 1.1.8
- snowballstemmer 2.2.0
- sortedcontainers 2.4.0
- sphinx 4.4.0
- sphinx-panels 0.6.0
- sphinx_rtd_theme 1.0.0
- sphinxcontrib-applehelp 1.0.2
- sphinxcontrib-devhelp 1.0.2
- sphinxcontrib-htmlhelp 2.0.0
- sphinxcontrib-jsmath 1.0.1
- sphinxcontrib-mermaid 0.7.1
- sphinxcontrib-qthelp 1.0.3
- sphinxcontrib-serializinghtml 1.1.5
- sqlite 3.37.0
- tblib 1.7.0
- threadpoolctl 2.2.0
- tifffile 2021.7.2
- tk 8.6.11
- toml 0.10.2
- toolz 0.11.2
- tornado 6.1
- typed-ast 1.4.3
- typing-extensions 3.10.0.2
- typing_extensions 3.10.0.2
- tzdata 2021e
- urllib3 1.26.8
- wheel 0.37.1
- xz 5.2.5
- yaml 0.2.5
- zfp 0.5.5
- zipp 3.7.0
- zlib 1.2.11
- zstd 1.4.9