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GitHub / mbbu / arbopan
A pangenomics pipeline tailored for arboviruses.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mbbu%2Farbopan
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: Nextflow
Repo Size: 4.21 MB
Dependencies:
49
Created: almost 2 years ago
Updated: 28 days ago
Last pushed: almost 2 years ago
Last synced: 28 days ago
Files
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Readme
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Dependencies
environment.yml
conda
- _libgcc_mutex 0.1
- _openmp_mutex 4.5
- bzip2 1.0.8
- c-ares 1.18.1
- ca-certificates 2021.10.8
- curl 7.82.0
- gfaffix 0.1.3
- gsl 2.7
- htslib 1.10
- keyutils 1.6.1
- krb5 1.19.3
- ld_impl_linux-64 2.36.1
- libblas 3.9.0
- libcblas 3.9.0
- libcurl 7.82.0
- libdeflate 1.3
- libedit 3.1.20191231
- libev 4.33
- libffi 3.4.2
- libgcc 7.2.0
- libgcc-ng 11.2.0
- libgfortran-ng 11.2.0
- libgfortran5 11.2.0
- libgomp 11.2.0
- libjemalloc 5.2.1
- libnghttp2 1.47.0
- libnsl 2.0.0
- libopenblas 0.3.20
- libssh2 1.10.0
- libstdcxx-ng 11.2.0
- libuuid 2.32.1
- libzlib 1.2.11
- mafft 7.505
- ncurses 6.3
- odgi 0.7.1
- openssl 3.0.2
- perl 5.32.1
- python 3.9.12
- python_abi 3.9
- readline 8.1
- snp-sites 2.5.1
- sqlite 3.38.2
- tabix 1.11
- tk 8.6.12
- tzdata 2022a
- vg 1.40.0
- wfmash 0.7.0
- xz 5.2.5
- zlib 1.2.11