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GitHub / mcalgaro93 / benchdamic
Benchmark of differential abundance methods on microbiome data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mcalgaro93%2Fbenchdamic
Stars: 5
Forks: 3
Open Issues: 0
License: None
Language: R
Repo Size: 5.61 MB
Dependencies:
41
Created: over 3 years ago
Updated: 11 months ago
Last pushed: 3 months ago
Last synced: 3 months ago
Commit Stats
Commits: 157
Authors: 5
Mean commits per author: 31.4
Development Distribution Score: 0.057
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/mcalgaro93/benchdamic
Topics: benchmark, differential-abundance-methods, metagenomics, microbiome
Files
Dependencies
- R >= 4.2.0 depends
- ALDEx2 * imports
- ANCOMBC * imports
- BiocParallel * imports
- DESeq2 * imports
- MAST * imports
- MGLM * imports
- NOISeq * imports
- RColorBrewer * imports
- Seurat * imports
- SummarizedExperiment * imports
- TreeSummarizedExperiment * imports
- corncob * imports
- cowplot * imports
- dearseq * imports
- detectseparation <= 0.2.0 imports
- edgeR * imports
- ffpe * imports
- ggdendro * imports
- ggplot2 * imports
- ggridges * imports
- graphics * imports
- limma * imports
- metagenomeSeq * imports
- methods * imports
- phyloseq * imports
- plyr * imports
- reshape2 * imports
- stats * imports
- stats4 * imports
- tidytext * imports
- utils * imports
- zinbwave * imports
- BiocStyle * suggests
- HMP16SData * suggests
- SPsimSeq * suggests
- curatedMetagenomicData * suggests
- kableExtra * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests