GitHub / michaelscutari / protclust

protclust is a Python library for protein sequence analysis that integrates MMseqs2 for fast clustering and provides tools for creating robust machine learning datasets. It offers cluster-aware data splitting to prevent sequence similarity bias in model evaluation, along with comprehensive protein embedding capabilities for feature generation.

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Topics: bioinformatics, clustering, computational-biology, data-preprocessing, dataset-creation, machine-learning, mmseqs2, protein-analysis, protein-sequences, sequence-embeddings, train-test-split

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