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GitHub / microsoft / station-b-libraries

Python and F# libraries developed for biological computation as part of the Station-B project.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microsoft%2Fstation-b-libraries

Stars: 7
Forks: 4
Open Issues: 18

License: mit
Language: Python
Repo Size: 7.04 MB
Dependencies: 2,494

Created: over 2 years ago
Updated: 10 months ago
Last pushed: 10 months ago
Last synced: 18 days ago

Files

Readme

Dependencies

PyStationB/requirements_dev.txt pypi

azure-identity ==1.6.0
azure-keyvault-secrets ==4.3.0
black ==21.5b1
docutils ==0.16
flake8 ==3.9.2
gitpython ==3.1.17
interrogate ==1.4.0
jupyter ==1.0.0
kaleido ==0.2.1
mock ==4.0.3
mypy ==0.910
pre-commit ==2.13.0
psutil ==5.8.0
pytest ==6.2.4
pytest-cov ==2.12.1
pytest-testmon ==1.1.1
pytest-timeout ==1.4.2
pytest-xdist ==2.3.0
sphinx ==4.1.2
sphinx-rtd-theme ==0.4.3

PyStationB/libraries/ABEX/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/libraries/GlobalPenalisation/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/libraries/PyBCKG/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/libraries/StaticCharacterization/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/libraries/UniProt/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/libraries/Utilities/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/projects/Barcoder/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/projects/CellSignalling/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/projects/Malvern/environment.yml conda

pip 20.1.1
python 3.8.3

PyStationB/projects/Malvern/requirements.txt pypi

azure-cosmosdb-table ==1.0.6
azure-storage-blob ==12.8.1
cffi ==1.14.6
dacite ==1.6.0
flask ==2.0.1
gpy ==1.10.0
matplotlib ==3.4.2
pydantic ==1.8.2
pyyaml ==5.4.1

PyStationB/projects/Malvern/setup.py pypi

str *

PyStationB/requirements.txt pypi

Pillow ==8.3.2
azure-cosmosdb-table ==1.0.6
azure-storage-blob ==12.8.1
azureml-core ==1.34.0
azureml-pipeline ==1.34.0
cffi ==1.14.6
cython ==0.29.24
dacite ==1.6.0
emcee ==3.1.0
flask ==2.0.1
gpy ==1.10.0
matplotlib ==3.4.2
munch ==2.5.0
numpy ==1.21.1
openpyxl ==3.0.7
pandas ==1.3.1
param ==1.11.1
parse ==1.19.0
plotly ==5.1.0
psycopg2-binary ==2.9.1
pydantic ==1.8.2
pydoe ==0.3.8
python-dotenv ==0.19.0
pyyaml ==5.4.1
rdflib ==6.0.0
requests ==2.26.0
scipy ==1.7.0
seaborn ==0.11.1
sobol-seq ==0.2.0
sqlalchemy ==1.4.22

PyStationB/environment.yml conda

pip 20.1.1
python 3.8.3

FsStationB/BCKG/REST/package.json npm

@babel/core ^7.6.4 development
@babel/plugin-transform-runtime ^7.6.2 development
@babel/preset-env ^7.9.6 development
@babel/runtime ^7.6.3 development
babel-loader ^8.0.5 development
copy-webpack-plugin ^6.1.0 development
core-js ^3.3.2 development
css-loader ^4.2.1 development
fable-compiler ^2.10.2 development
fable-loader ^2.1.8 development
file-loader ^4.2.0 development
html-webpack-plugin ^3.2.0 development
mini-css-extract-plugin ^0.10.0 development
react ^16.10.2 development
react-dom ^16.10.2 development
remotedev ^0.2.9 development
resolve-url-loader ^3.1.0 development
sass ^1.26.10 development
sass-loader ^9.0.3 development
selfsigned ^1.10.8 development
style-loader ^1.2.1 development
terser ^4.3.9 development
webpack ^4.41.2 development
webpack-cli ^3.3.9 development
webpack-dev-server ^3.8.2 development

FsStationB/package.json npm

@babel/core ^7.6.4 development
@babel/plugin-transform-runtime ^7.6.2 development
@babel/preset-env ^7.9.6 development
@babel/runtime ^7.6.3 development
babel-loader ^8.0.5 development
copy-webpack-plugin ^6.1.0 development
core-js ^3.3.2 development
css-loader ^4.2.1 development
fable-compiler ^2.10.2 development
fable-loader ^2.1.8 development
file-loader ^4.2.0 development
html-webpack-plugin ^3.2.0 development
mini-css-extract-plugin ^0.10.0 development
react ^16.10.2 development
react-dom ^16.10.2 development
remotedev ^0.2.9 development
resolve-url-loader ^3.1.0 development
sass ^1.26.10 development
sass-loader ^9.0.3 development
selfsigned ^1.10.8 development
style-loader ^1.2.1 development
terser ^4.3.9 development
webpack ^4.41.2 development
webpack-cli ^3.3.9 development
webpack-dev-server ^3.8.2 development

PyStationB/projects/Malvern/package.json npm

@fluentui/react 7.144.2
@testing-library/jest-dom ^5.11.4
@testing-library/react ^11.1.0
@testing-library/user-event ^12.1.10
@types/jest ^26.0.15
@types/node ^12.0.0
@types/react ^17.0.0
@types/react-dom ^17.0.0
@types/react-redux 7.1.16
@types/react-router-dom 5.1.5
axios ^0.21.1
azure-storage 2.10.3
react ^17.0.1
react-app-polyfill 1.0.6
react-bootstrap ^1.5.2
react-dom ^17.0.1
react-redux 7.2.3
react-router-dom 5.2.0
react-scripts 4.0.2
react-transition-group 4.4.1
redux 4.0.5
redux-persist 6.0.0
redux-thunk 2.3.0
typescript ^4.1.2
web-vitals ^1.0.1

FsStationB/BCKG/REST/tools/FSharpGenerator/Generator.csproj nuget

Microsoft.OpenApi 1.2.3
Microsoft.OpenApi.Readers 1.2.3

FsStationB/BCKG/REST/tools/PyClient/environment.yml pypi

openapi-parser *

PyStationB/additional_requirements_dev.txt pypi

black ==21.5b1
gitpython ==3.1.17

PyStationB/fixed_requirements.txt pypi

docutils ==0.16
sphinx =4.0.1
sphinx-rtd-theme ==0.4.3

PyStationB/libraries/ABEX/internal_requirements.txt pypi

Emukit *
Utilities *

PyStationB/libraries/ABEX/requirements.txt pypi

azureml-core ==1.34.0
azureml-pipeline ==1.34.0
cython ==0.29.24
emcee ==3.1.0
gpy ==1.10.0
matplotlib ==3.4.2
pandas ==1.3.1
param ==1.11.1
pydantic ==1.8.2
pydoe ==0.3.8
pyyaml ==5.4.1
requests ==2.26.0
scipy ==1.7.0
seaborn ==0.11.1
sobol-seq ==0.2.0

PyStationB/libraries/ABEX/requirements_dev.txt pypi

azure-identity ==1.6.0
azure-keyvault-secrets ==4.3.0
docutils ==0.16
flake8 ==3.9.2
interrogate ==1.4.0
jupyter ==1.0.0
mock ==4.0.3
mypy ==0.910
pre-commit ==2.13.0
pytest ==6.2.4
pytest-cov ==2.12.1
pytest-testmon ==1.1.1
pytest-timeout ==1.4.2
pytest-xdist ==2.3.0
sphinx ==4.1.2
sphinx-rtd-theme ==0.4.3

PyStationB/libraries/ABEX/setup.py pypi

str *

PyStationB/libraries/GlobalPenalisation/requirements.txt pypi

azureml-core *
botorch ==0.5.0
emukit gradients-for-covariance-gpy
gpy ==1.10
gpytorch ==1.5.0
jax ==0.2.13
jaxlib ==0.1.67
matplotlib ==3.4.2
numpy ==1.20.3
pandas ==1.2.4
pyyaml ==5.4.1
scipy ==1.6.3
seaborn ==0.11.1
setuptools ==52.0.0
six ==1.16.0
torch ==1.8.1
tqdm ==4.60.0
wheel ==0.36.2

PyStationB/libraries/GlobalPenalisation/requirements_dev.txt pypi

PyStationB/libraries/GlobalPenalisation/setup.py pypi

jax *
jaxlib *
numpy *
torch *

PyStationB/libraries/PyBCKG/requirements.txt pypi

dacite ==1.6.0
matplotlib ==3.4.2
munch ==2.5.0
pandas ==1.3.1
psycopg2-binary ==2.9.1
pydantic ==1.8.2
python-dotenv ==0.19.0
requests ==2.26.0
seaborn ==0.11.1
sqlalchemy ==1.4.22

PyStationB/libraries/PyBCKG/requirements_dev.txt pypi

flake8 ==3.9.2
mypy ==0.910
pytest ==6.2.4

PyStationB/libraries/PyBCKG/setup.py pypi

str *

PyStationB/libraries/StaticCharacterization/internal_requirements.txt pypi

Utilities *

PyStationB/libraries/StaticCharacterization/requirements.txt pypi

matplotlib ==3.4.2
numpy ==1.21.1
pandas ==1.3.1
pydantic ==1.8.2
scipy ==1.7.0

PyStationB/libraries/StaticCharacterization/setup.py pypi

str *

PyStationB/libraries/UniProt/requirements.txt pypi

dacite ==1.6.0
parse ==1.19.0
rdflib ==6.0.0
requests ==2.26.0

PyStationB/libraries/UniProt/requirements_dev.txt pypi

flake8 ==3.9.2
mypy ==0.910
pytest ==6.2.4

PyStationB/libraries/UniProt/setup.py pypi

str *

PyStationB/libraries/Utilities/requirements.txt pypi

Pillow ==8.3.2
matplotlib ==3.4.2
numpy ==1.21.1

PyStationB/libraries/Utilities/setup.py pypi

str *

PyStationB/projects/Barcoder/internal_requirements.txt pypi

PyBCKG *
Utilities *

PyStationB/projects/Barcoder/requirements.txt pypi

numpy ==1.21.1
pandas ==1.3.1
plotly ==5.1.0

PyStationB/projects/Barcoder/requirements_dev.txt pypi

flake8 ==3.9.2
kaleido ==0.2.1
mypy ==0.910
psutil ==5.8.0
pytest ==6.2.4

PyStationB/projects/Barcoder/setup.py pypi

str *

PyStationB/projects/CellSignalling/internal_requirements.txt pypi

PyStationB/projects/CellSignalling/requirements.txt pypi

matplotlib ==3.4.2
numpy ==1.21.1
openpyxl ==3.0.7
pandas ==1.3.1
pydantic ==1.8.2
pyyaml ==5.4.1
scipy ==1.7.0
seaborn ==0.11.1

PyStationB/projects/CellSignalling/requirements_dev.txt pypi

azure-identity ==1.6.0
azure-keyvault-secrets ==4.3.0
docutils ==0.16
flake8 ==3.9.2
interrogate ==1.4.0
jupyter ==1.0.0
mock ==4.0.3
mypy ==0.910
pre-commit ==2.13.0
pytest ==6.2.4
pytest-cov ==2.12.1
pytest-testmon ==1.1.1
pytest-timeout ==1.4.2
pytest-xdist ==2.3.0
sphinx ==4.1.2
sphinx-rtd-theme ==0.4.3

PyStationB/projects/CellSignalling/setup.py pypi

str *

PyStationB/projects/Malvern/internal_requirements.txt pypi

FsStationB/BCKG/REST/package-lock.json npm

818 dependencies

FsStationB/paket.lock nuget

365 dependencies

FsStationB/BCKG/REST/paket.lock nuget

149 dependencies

FsStationB/yarn.lock npm

861 dependencies