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GitHub / nalinimsingh / mm-cell_lines

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nalinimsingh%2Fmm-cell_lines

Stars: 2
Forks: 0
Open Issues: 0

License: None
Language: Jupyter Notebook
Repo Size: 20 MB
Dependencies: 439

Created: about 3 years ago
Updated: 9 months ago
Last pushed: almost 3 years ago
Last synced: 9 months ago

Files

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Dependencies

requirements/CCLE_transfer_requirements.txt pypi

absl-py =0.12.0=pypi_0
anndata =0.7.5=pypi_0
anyio =2.2.0=py37haa95532_0
argon2-cffi =20.1.0=py37h2bbff1b_1
astor =0.8.1=pypi_0
astunparse =1.6.3=pypi_0
async_generator =1.10=py37h28b3542_0
attrs =20.3.0=pyhd3eb1b0_0
autograd =1.3=pypi_0
autograd-gamma =0.5.0=pypi_0
babel =2.9.0=pyhd3eb1b0_0
backcall =0.2.0=pyhd3eb1b0_0
biothings-client =0.2.6=pypi_0
blas =1.0=mkl
bleach =3.3.0=pyhd3eb1b0_0
brotlipy =0.7.0=py37h2bbff1b_1003
ca-certificates =2021.4.13=haa95532_1
cachetools =4.2.1=pypi_0
certifi =2020.12.5=py37haa95532_0
cffi =1.14.5=py37hcd4344a_0
chardet =4.0.0=py37haa95532_1003
cloudpickle =1.6.0=pypi_0
colorama =0.4.4=pyhd3eb1b0_0
cryptography =3.4.7=py37h71e12ea_0
cudatoolkit =10.1.243=h74a9793_0
cvxcanon =0.1.1=py37hf11a4ad_0
cvxpy =1.1.11=py37h03978a9_0
cvxpy-base =1.1.11=py37h08fd248_0
cycler =0.10.0=py37_0
cython =0.29.22=py37hd77b12b_0
decorator =4.4.2=pyhd3eb1b0_0
defusedxml =0.7.1=pyhd3eb1b0_0
dm-tree =0.1.5=pypi_0
ecos =2.0.7.post1=py37h080aedc_0
entrypoints =0.3=py37_0
et-xmlfile =1.0.1=pypi_0
fancyimpute =0.5.5=pypi_0
flatbuffers =1.12=pypi_0
formulaic =0.2.3=pypi_0
freetype =2.10.4=hd328e21_0
future =0.18.2=pypi_0
gast =0.3.3=pypi_0
get-version =2.1=pypi_0
google-auth =1.28.0=pypi_0
google-auth-oauthlib =0.4.3=pypi_0
google-pasta =0.2.0=pypi_0
grpcio =1.32.0=pypi_0
h5py =2.10.0=py37h5e291fa_0
hdf5 =1.10.4=h7ebc959_0
icc_rt =2019.0.0=h0cc432a_1
icu =58.2=ha925a31_3
idna =2.10=pyhd3eb1b0_0
importlib-metadata =3.7.3=py37haa95532_1
importlib_metadata =3.7.3=hd3eb1b0_1
intel-openmp =2020.2=254
interface-meta =1.2.3=pypi_0
ipdb =0.13.4=pyhd3deb0d_0
ipykernel =5.3.4=py37h5ca1d4c_0
ipython =7.22.0=py37hd4e2768_0
ipython_genutils =0.2.0=pyhd3eb1b0_1
itsdangerous =1.1.0=pypi_0
jedi =0.17.0=py37_0
jinja2 =2.11.3=pyhd3eb1b0_0
joblib =1.0.1=pyhd3eb1b0_0
jpeg =9b=hb83a4c4_2
json5 =0.9.5=py_0
jsonschema =3.2.0=py_2
jupyter-packaging =0.7.12=pyhd3eb1b0_0
jupyter-tensorboard =0.2.0=pypi_0
jupyter_client =6.1.12=pyhd3eb1b0_0
jupyter_core =4.7.1=py37haa95532_0
jupyter_server =1.4.1=py37haa95532_0
jupyterlab =3.0.11=pyhd3eb1b0_0
jupyterlab_pygments =0.1.2=py_0
jupyterlab_server =2.4.0=pyhd3eb1b0_0
keras =2.4.3=pypi_0
keras-preprocessing =1.1.2=pypi_0
keras-tuner =1.0.2=pypi_0
kiwisolver =1.3.1=py37hd77b12b_0
knnimpute =0.1.0=pypi_0
legacy-api-wrap =1.2=pypi_0
leidenalg =0.8.3=pypi_0
libblas =3.9.0=1_h8933c1f_netlib
liblapack =3.9.0=3_hd5c7e75_netlib
libpng =1.6.37=h2a8f88b_0
libsodium =1.0.18=h62dcd97_0
libtiff =4.1.0=h56a325e_1
libuv =1.40.0=he774522_0
lifelines =0.25.10=pypi_0
llvmlite =0.36.0=py37h34b8924_4
lz4-c =1.9.3=h2bbff1b_0
m2w64-bwidget =1.9.10=2
m2w64-bzip2 =1.0.6=6
m2w64-expat =2.1.1=2
m2w64-fftw =3.3.4=6
m2w64-flac =1.3.1=3
m2w64-gcc-libgfortran =5.3.0=6
m2w64-gcc-libs =5.3.0=7
m2w64-gcc-libs-core =5.3.0=7
m2w64-gettext =0.19.7=2
m2w64-gmp =6.1.0=2
m2w64-gsl =2.1=2
m2w64-libiconv =1.14=6
m2w64-libjpeg-turbo =1.4.2=3
m2w64-libogg =1.3.2=3
m2w64-libpng =1.6.21=2
m2w64-libsndfile =1.0.26=2
m2w64-libtiff =4.0.6=2
m2w64-libvorbis =1.3.5=2
m2w64-libwinpthread-git =5.0.0.4634.697f757=2
m2w64-libxml2 =2.9.3=4
m2w64-mpfr =3.1.4=4
m2w64-openblas =0.2.19=1
m2w64-pcre =8.38=2
m2w64-speex =1.2rc2=3
m2w64-speexdsp =1.2rc3=3
m2w64-tcl =8.6.5=3
m2w64-tk =8.6.5=3
m2w64-tktable =2.10=5
m2w64-wineditline =2.101=5
m2w64-xz =5.2.2=2
m2w64-zlib =1.2.8=10
markdown =3.3.4=pypi_0
markupsafe =1.1.1=py37hfa6e2cd_1
matplotlib =3.3.4=py37haa95532_0
matplotlib-base =3.3.4=py37h49ac443_0
mistune =0.8.4=py37hfa6e2cd_1001
mkl =2020.2=256
mkl-service =2.3.0=py37h196d8e1_0
mkl_fft =1.3.0=py37h46781fe_0
mkl_random =1.1.1=py37h47e9c7a_0
msys2-conda-epoch =20160418=1
mygene =3.2.2=pypi_0
natsort =7.1.1=pypi_0
nbclassic =0.2.6=pyhd3eb1b0_0
nbclient =0.5.3=pyhd3eb1b0_0
nbconvert =6.0.7=py37_0
nbformat =5.1.2=pyhd3eb1b0_1
nest-asyncio =1.5.1=pyhd3eb1b0_0
networkx =2.5=pypi_0
ninja =1.10.2=py37h6d14046_0
notebook =6.3.0=py37haa95532_0
numba =0.53.1=py37hf11a4ad_0
numexpr =2.7.3=pypi_0
numpy =1.19.2=py37hadc3359_0
numpy-base =1.19.2=py37ha3acd2a_0
oauthlib =3.1.0=pypi_0
olefile =0.46=py37_0
openpyxl =3.0.7=pypi_0
openssl =1.1.1k=h2bbff1b_0
opt-einsum =3.3.0=pypi_0
osqp =0.6.2=py37h08fd248_1
packaging =20.9=pyhd3eb1b0_0
pandas =1.2.3=py37hf11a4ad_0
pandoc =2.12=haa95532_0
pandocfilters =1.4.3=py37haa95532_1
parso =0.8.2=pyhd3eb1b0_0
patsy =0.5.1=pypi_0
pickle5 =0.0.11=py37h4ab8f01_0
pickleshare =0.7.5=pyhd3eb1b0_1003
pillow =8.1.2=py37h4fa10fc_0
pip =21.0.1=py37haa95532_0
prometheus_client =0.9.0=pyhd3eb1b0_0
prompt-toolkit =3.0.17=pyh06a4308_0
protobuf =3.15.6=pypi_0
pyasn1 =0.4.8=pypi_0
pyasn1-modules =0.2.8=pypi_0
pybiomart =0.2.0=pypi_0
pycparser =2.20=py_2
pygments =2.8.1=pyhd3eb1b0_0
pynndescent =0.5.2=pypi_0
pyopenssl =20.0.1=pyhd3eb1b0_1
pyparsing =2.4.7=pyhd3eb1b0_0
pypdf2 =1.26.0=pypi_0
pyqt =5.9.2=py37h6538335_2
pyreadline =2.1=py37_1
pyro-api =0.1.2=pypi_0
pyro-ppl =1.6.0=pypi_0
pyrsistent =0.17.3=py37he774522_0
pysocks =1.7.1=py37_1
python =3.7.10=h6244533_0
python-dateutil =2.8.1=pyhd3eb1b0_0
python-igraph =0.9.0=pypi_0
python_abi =3.7=1_cp37m
pytorch =1.8.0=py3.7_cuda10.1_cudnn7_0
pytz =2021.1=pyhd3eb1b0_0
pywin32 =227=py37he774522_1
pywinpty =0.5.7=py37_0
pyyaml =5.4.1=pypi_0
pyzmq =20.0.0=py37hd77b12b_1
qdldl =0.1.5.post0=pypi_0
qdldl-python =0.1.5=py37h08fd248_0
qt =5.9.7=vc14h73c81de_0
r-base =3.6.1=hf18239d_1
r-boot =1.3_20=r36h6115d3f_0
r-class =7.3_15=r36h6115d3f_0
r-cluster =2.0.8=r36h6115d3f_0
r-codetools =0.2_16=r36h6115d3f_0
r-foreign =0.8_71=r36h6115d3f_0
r-kernsmooth =2.23_15=r36h6115d3f_4
r-lattice =0.20_38=r36h6115d3f_0
r-mass =7.3_51.3=r36h6115d3f_0
r-matrix =1.2_17=r36h6115d3f_0
r-mgcv =1.8_28=r36h6115d3f_0
r-nlme =3.1_139=r36h6115d3f_0
r-nnet =7.3_12=r36h6115d3f_0
r-recommended =3.6.0=r36_0
r-rpart =4.1_15=r36h6115d3f_0
r-spatial =7.3_11=r36h6115d3f_4
r-survival =2.44_1.1=r36h6115d3f_0
requests =2.25.1=pyhd3eb1b0_0
requests-cache =0.6.3=pypi_0
requests-oauthlib =1.3.0=pypi_0
rsa =4.7.2=pypi_0
scanpy =1.7.1=pypi_0
scikit-learn =0.24.1=py37hf11a4ad_0
scipy =1.6.2=py37h14eb087_0
scs =2.1.2=py37hc76debe_2
seaborn =0.11.1=pyhd3eb1b0_0
send2trash =1.5.0=pyhd3eb1b0_1
setuptools =52.0.0=py37haa95532_0
sinfo =0.3.1=pypi_0
sip =4.19.8=py37h6538335_0
six =1.15.0=py37haa95532_0
sniffio =1.2.0=py37haa95532_1
sqlite =3.35.3=h2bbff1b_0
statsmodels =0.12.2=pypi_0
stdlib-list =0.8.0=pypi_0
tables =3.6.1=pypi_0
tabulate =0.8.9=pypi_0
tbb =2020.3=h74a9793_0
tensorboard =2.4.1=pypi_0
tensorboard-plugin-wit =1.8.0=pypi_0
tensorflow =2.4.1=pypi_0
tensorflow-estimator =2.4.0=pypi_0
tensorflow-probability =0.12.1=pypi_0
termcolor =1.1.0=pypi_0
terminado =0.9.4=py37haa95532_0
terminaltables =3.1.0=pypi_0
testpath =0.4.4=pyhd3eb1b0_0
texttable =1.6.3=pypi_0
threadpoolctl =2.1.0=pyh5ca1d4c_0
tk =8.6.10=he774522_0
torch =1.8.0=pypi_0
torchvision =0.9.0=py37_cu101
tornado =6.1=py37h2bbff1b_0
tqdm =4.59.0=pypi_0
traitlets =5.0.5=pyhd3eb1b0_0
tslearn =0.5.0.5=py37hda49f71_0
typing_extensions =3.7.4.3=pyha847dfd_0
umap-learn =0.5.1=pypi_0
url-normalize =1.4.3=pypi_0
urllib3 =1.26.4=pyhd3eb1b0_0
vc =14.2=h21ff451_1
vs2015_runtime =14.27.29016=h5e58377_2
wcwidth =0.2.5=py_0
webencodings =0.5.1=py37_1
werkzeug =1.0.1=pypi_0
wheel =0.36.2=pyhd3eb1b0_0
win_inet_pton =1.1.0=py37haa95532_0
wincertstore =0.2=py37_0
winpty =0.4.3=4
wrapt =1.12.1=pypi_0
xlrd =2.0.1=pypi_0
xz =5.2.5=h62dcd97_0
zeromq =4.3.3=ha925a31_3
zipp =3.4.1=pyhd3eb1b0_0
zlib =1.2.11=h62dcd97_4
zstd =1.4.9=h19a0ad4_0

requirements/requirements_autoencoders.txt pypi

absl-py =0.12.0=pypi_0
anndata =0.7.5=pypi_0
appnope =0.1.2=py38h50d1736_1
argon2-cffi =20.1.0=pypi_0
astor =0.8.1=pypi_0
astunparse =1.6.3=pypi_0
async-generator =1.10=pypi_0
attrs =20.3.0=pypi_0
autograd =1.3=pypi_0
autograd-gamma =0.5.0=pypi_0
backcall =0.2.0=pyh9f0ad1d_0
backports =1.0=py_2
backports.functools_lru_cache =1.6.1=py_0
bleach =3.3.0=pypi_0
ca-certificates =2021.1.19=hecd8cb5_1
cachetools =4.2.1=pypi_0
certifi =2020.12.5=py38hecd8cb5_0
cffi =1.14.5=pypi_0
chardet =4.0.0=pypi_0
cloudpickle =1.6.0=pypi_0
colorama =0.4.4=pypi_0
cvxpy =1.1.11=pypi_0
cycler =0.10.0=pypi_0
decorator =4.4.2=py_0
defusedxml =0.7.1=pypi_0
dm-tree =0.1.5=pypi_0
ecos =2.0.7.post1=pypi_0
entrypoints =0.3=pypi_0
et_xmlfile =1.0.1=py_1001
fancyimpute =0.5.5=pypi_0
flatbuffers =1.12=pypi_0
formulaic =0.2.3=pypi_0
future =0.18.2=pypi_0
gast =0.3.3=pypi_0
get-version =2.1=pypi_0
google-auth =1.28.0=pypi_0
google-auth-oauthlib =0.4.3=pypi_0
google-pasta =0.2.0=pypi_0
grpcio =1.32.0=pypi_0
h5py =2.10.0=pypi_0
idna =2.10=pypi_0
interface-meta =1.2.3=pypi_0
ipdb =0.13.4=pyhd3deb0d_0
ipykernel =5.5.0=pypi_0
ipython =7.21.0=py38h9bb44b7_0
ipython_genutils =0.2.0=py_1
jdcal =1.4.1=py_0
jedi =0.18.0=py38h50d1736_2
jinja2 =2.11.3=pypi_0
joblib =1.0.1=pyhd8ed1ab_0
jsonschema =3.2.0=pypi_0
jupyter-client =6.1.12=pypi_0
jupyter-core =4.7.1=pypi_0
jupyter-tensorboard =0.2.0=pypi_0
jupyterlab-pygments =0.1.2=pypi_0
keras =2.4.3=pypi_0
keras-preprocessing =1.1.2=pypi_0
keras-tuner =1.0.2=pypi_0
kiwisolver =1.3.1=pypi_0
knnimpute =0.1.0=pypi_0
legacy-api-wrap =1.2=pypi_0
leidenalg =0.8.3=pypi_0
libblas =3.9.0=8_openblas
libcblas =3.9.0=8_openblas
libcxx =11.1.0=habf9029_0
libffi =3.3=h046ec9c_2
libgfortran =5.0.0=9_3_0_h6c81a4c_20
libgfortran5 =9.3.0=h6c81a4c_20
liblapack =3.9.0=8_openblas
libllvm10 =10.0.1=h009f743_3
libopenblas =0.3.12=openmp_h54245bb_1
lifelines =0.25.10=pypi_0
llvm-openmp =11.1.0=hda6cdc1_0
llvmlite =0.36.0=py38h872f124_0
markdown =3.3.4=pypi_0
markupsafe =1.1.1=pypi_0
matplotlib =3.3.4=pypi_0
mistune =0.8.4=pypi_0
natsort =7.1.1=pypi_0
nbclient =0.5.3=pypi_0
nbconvert =6.0.7=pypi_0
nbformat =5.1.2=pypi_0
ncurses =6.2=h2e338ed_4
nest-asyncio =1.5.1=pypi_0
networkx =2.5=pypi_0
notebook =6.3.0=pypi_0
numba =0.53.0=py38hab5c5c7_1
numexpr =2.7.3=pypi_0
numpy =1.19.5=pypi_0
oauthlib =3.1.0=pypi_0
openpyxl =3.0.7=pyhd3eb1b0_0
openssl =1.1.1k=h9ed2024_0
opt-einsum =3.3.0=pypi_0
osqp =0.6.2.post0=pypi_0
packaging =20.9=pypi_0
pandas =1.2.3=pypi_0
pandocfilters =1.4.3=pypi_0
parso =0.8.1=pyhd8ed1ab_0
patsy =0.5.1=pypi_0
pexpect =4.8.0=pyh9f0ad1d_2
pickleshare =0.7.5=py_1003
pillow =8.1.2=pypi_0
pip =21.0.1=pyhd8ed1ab_0
prometheus-client =0.9.0=pypi_0
prompt-toolkit =3.0.18=pyha770c72_0
protobuf =3.15.6=pypi_0
ptyprocess =0.7.0=pyhd3deb0d_0
pyasn1 =0.4.8=pypi_0
pyasn1-modules =0.2.8=pypi_0
pycparser =2.20=pypi_0
pygments =2.8.1=pyhd8ed1ab_0
pynndescent =0.5.2=pypi_0
pyparsing =2.4.7=pypi_0
pyro-api =0.1.2=pypi_0
pyro-ppl =1.6.0=pypi_0
pyrsistent =0.17.3=pypi_0
python =3.8.8=h4e93d89_0_cpython
python-dateutil =2.8.1=pypi_0
python-igraph =0.9.0=pypi_0
python_abi =3.8=1_cp38
pytz =2021.1=pypi_0
pyyaml =5.4.1=pypi_0
pyzmq =22.0.3=pypi_0
qdldl =0.1.5.post0=pypi_0
readline =8.1=h05e3726_0
requests =2.25.1=pypi_0
requests-oauthlib =1.3.0=pypi_0
rsa =4.7.2=pypi_0
scanpy =1.7.1=pypi_0
scikit-learn =0.24.1=py38hfd19401_0
scipy =1.6.1=py38h41e0fa8_0
scs =2.1.2=pypi_0
seaborn =0.11.1=pypi_0
send2trash =1.5.0=pypi_0
setuptools =49.6.0=py38h50d1736_3
sinfo =0.3.1=pypi_0
six =1.15.0=pypi_0
sqlite =3.35.2=h44b9ce1_0
statsmodels =0.12.2=pypi_0
stdlib-list =0.8.0=pypi_0
tables =3.6.1=pypi_0
tabulate =0.8.9=pypi_0
tensorboard =2.4.1=pypi_0
tensorboard-plugin-wit =1.8.0=pypi_0
tensorflow =2.4.1=pypi_0
tensorflow-estimator =2.4.0=pypi_0
tensorflow-probability =0.12.1=pypi_0
termcolor =1.1.0=pypi_0
terminado =0.9.3=pypi_0
terminaltables =3.1.0=pypi_0
testpath =0.4.4=pypi_0
texttable =1.6.3=pypi_0
threadpoolctl =2.1.0=pyh5ca1d4c_0
tk =8.6.10=h0419947_1
torch =1.8.0=pypi_0
tornado =6.1=pypi_0
tqdm =4.59.0=pypi_0
traitlets =5.0.5=py_0
tslearn =0.5.0.5=py38hc7193ba_0
typing-extensions =3.7.4.3=pypi_0
umap-learn =0.5.1=pypi_0
urllib3 =1.26.4=pypi_0
wcwidth =0.2.5=pyh9f0ad1d_2
webencodings =0.5.1=pypi_0
werkzeug =1.0.1=pypi_0
wheel =0.36.2=pyhd3deb0d_0
wrapt =1.12.1=pypi_0
xlrd =2.0.1=pyhd3eb1b0_0
xz =5.2.5=haf1e3a3_1
zlib =1.2.11=h7795811_1010