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GitHub / nilshoffmann / mzmine3

MZmine 3 source code repository

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nilshoffmann%2Fmzmine3

Fork of mzmine/mzmine
Stars: 0
Forks: 0
Open Issues: 0

License: mit
Language: Java
Repo Size: 689 MB
Dependencies: 129

Created: about 4 years ago
Updated: over 2 years ago
Last pushed: about 1 month ago
Last synced: 10 days ago

Commit Stats

Commits: 9465
Authors: 77
Mean commits per author: 122.92
Development Distribution Score: 0.713
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/nilshoffmann/mzmine3

Files

Readme

Dependencies

.github/workflows/codeql-analysis.yml actions

actions/checkout v3 composite
actions/setup-java v3 composite
github/codeql-action/analyze v2 composite
github/codeql-action/init v2 composite
gradle/gradle-build-action v2 composite

.github/workflows/gradle.yml actions

actions/checkout v3 composite
actions/checkout v2 composite
actions/download-artifact v2 composite
actions/setup-java v3 composite
actions/upload-artifact v2 composite
gradle/gradle-build-action v2 composite
marvinpinto/action-automatic-releases latest composite
papeloto/action-zip v1 composite
stefanzweifel/git-auto-commit-action v4 composite

.github/workflows/gradle_release.yml actions

actions/checkout v2 composite
actions/download-artifact v2 composite
gradle/gradle-build-action v2 composite
marvinpinto/action-automatic-releases latest composite
stefanzweifel/git-auto-commit-action v4 composite

.github/workflows/macos_sign.yml actions

actions/checkout v2 composite
actions/setup-java v2 composite
actions/upload-artifact v2 composite
gradle/gradle-build-action v2 composite
papeloto/action-zip v1 composite

.github/workflows/repo_analysis.yml actions

actions/checkout master composite
actions/upload-artifact master composite
mzmine/mzmine3 master composite

action.yml actions

docker://srcd/hercules latest docker

build.gradle maven

com.fasterxml.jackson.core:jackson-annotations $jacksonVersion implementation
com.fasterxml.jackson.core:jackson-core $jacksonVersion implementation
com.fasterxml.jackson.core:jackson-databind $jacksonVersion implementation
com.github.jbytecode:RCaller 4.0.2 implementation
com.github.oshi:oshi-core 4.5.2 implementation
com.github.robinschmid:gs-core 45504f632f implementation
com.github.robinschmid:jimzMLParser mzmine_local_obo-SNAPSHOT implementation
com.github.yannrichet:JMathPlot 1.0.1 implementation
com.google.code.gson:gson 2.8.9 implementation
com.google.guava:guava $guavaVersion implementation
com.itextpdf:itextpdf 5.5.13.2 implementation
com.miglayout:miglayout 3.7.4 implementation
com.squareup.okhttp:logging-interceptor $okhttpVersion implementation
com.squareup.okhttp:okhttp $okhttpVersion implementation
com.sun.xml.bind:jaxb-core 2.3.0.1 implementation
com.sun.xml.bind:jaxb-impl 2.3.2 implementation
com.vdurmont:semver4j 3.1.0 implementation
de.isas.mztab:jmztabm-io $jmzTabmVersion implementation
edu.ucar:netcdf4 4.5.5 implementation
gnf:clustering 20210422 implementation
io.github.msdk:msdk-featuredetection-adap3d $msdkVersion implementation
io.github.msdk:msdk-id-sirius $msdkVersion implementation
io.github.msdk:msdk-io-mzml $msdkVersion implementation
io.github.msdk:msdk-io-netcdf $msdkVersion implementation
io.gsonfire:gson-fire 1.8.5 implementation
io.swagger:swagger-annotations $swaggerVersion implementation
it.unimi.dsi:fastutil 8.5.6 implementation
javax.activation:javax.activation-api 1.2.0 implementation
javax.mail:javax.mail-api 1.6.2 implementation
javax.xml.bind:jaxb-api 2.3.1 implementation
mysql:mysql-connector-java 5.1.34 implementation
mzmine:gslibml 0.0.1 implementation
mzmine:jmprojection 1.0 implementation
net.csibio.aird:aird-sdk 1.1.6.1 implementation
net.java.dev.jna:jna $jnaVersion implementation
net.sf.epsgraphics:epsgraphics 1.2 implementation
net.sourceforge.jmol:jmol 14.31.10 implementation
nz.ac.waikato.cms.weka:weka-stable 3.8.5 implementation
org.apache.commons:commons-math 2.2 implementation
org.apache.logging.log4j:log4j-core * implementation
org.apache.poi:poi $poiVersion implementation
org.apache.poi:poi-ooxml $poiVersion implementation
org.apache.xmlgraphics:batik-anim $batikVersion implementation
org.apache.xmlgraphics:batik-awt-util $batikVersion implementation
org.apache.xmlgraphics:batik-codec $batikVersion implementation
org.apache.xmlgraphics:batik-dom $batikVersion implementation
org.apache.xmlgraphics:batik-ext $batikVersion implementation
org.apache.xmlgraphics:batik-gui-util $batikVersion implementation
org.apache.xmlgraphics:batik-parser $batikVersion implementation
org.apache.xmlgraphics:batik-rasterizer $batikVersion implementation
org.apache.xmlgraphics:batik-svg-dom $batikVersion implementation
org.apache.xmlgraphics:batik-svggen $batikVersion implementation
org.apache.xmlgraphics:batik-swing $batikVersion implementation
org.apache.xmlgraphics:batik-transcoder $batikVersion implementation
org.apache.xmlgraphics:batik-ttf2svg $batikVersion implementation
org.apache.xmlgraphics:batik-util $batikVersion implementation
org.apache.xmlgraphics:fop 2.6 implementation
org.apache.xmlgraphics:xmlgraphics-commons 2.6 implementation
org.controlsfx:controlsfx $controlsfxVersion implementation
org.du-lab.adap:adap 4.1.10 implementation
org.eclipse.parsson:jakarta.json 1.1.0 implementation
org.freehep:freehep-graphicsio-emf 2.4 implementation
org.graphstream:gs-algo 2.0 implementation
org.graphstream:gs-core 2.0 implementation
org.graphstream:gs-ui-javafx 2.0 implementation
org.jetbrains:annotations 22.0.0 implementation
org.jfree:jfreechart 1.5.3 implementation
org.jfree:org.jfree.chart.fx 2.0.1 implementation
org.jfree:org.jfree.fxgraphics2d 2.1.1 implementation
org.jfree:org.jfree.pdf 2.0 implementation
org.jfree:org.jfree.svg 4.1 implementation
org.json:json 20211205 implementation
org.kordamp.ikonli:ikonli-bootstrapicons-pack 12.3.1 implementation
org.kordamp.ikonli:ikonli-javafx 12.3.1 implementation
org.nuiton.thirdparty:REngine 1.8-5 implementation
org.nuiton.thirdparty:Rserve 1.8-5 implementation
org.openscience.cdk:cdk-core $cdkVersion implementation
org.openscience.cdk:cdk-data $cdkVersion implementation
org.openscience.cdk:cdk-formula $cdkVersion implementation
org.openscience.cdk:cdk-interfaces $cdkVersion implementation
org.openscience.cdk:cdk-io $cdkVersion implementation
org.openscience.cdk:cdk-renderawt $cdkVersion implementation
org.openscience.cdk:cdk-renderbasic $cdkVersion implementation
org.openscience.cdk:cdk-sdg $cdkVersion implementation
org.openscience.cdk:cdk-silent $cdkVersion implementation
org.openscience.cdk:cdk-smiles $cdkVersion implementation
org.openscience.cdk:cdk-standard $cdkVersion implementation
org.ostermiller:utils 1.07.00 implementation
org.postgresql:postgresql 9.3-1102-jdbc41 implementation
org.rsc.chemspider:chemspider-api 1.0.0 implementation
org.slf4j:slf4j-api $slf4jVersion implementation
org.slf4j:slf4j-jdk14 $slf4jVersion implementation
org.threeten:threetenbp 1.3.8 implementation
org.xerial:sqlite-jdbc 3.8.11.2 implementation
uk.ac.ebi.jmzml:jmzml 1.7.11 implementation
uk.ac.ebi.pride:jmztab-modular-model $jmztabVersion implementation
uk.ac.ebi.pride:jmztab-modular-util $jmztabVersion implementation
org.junit.jupiter:junit-jupiter-api $junitversion testImplementation
org.mockito:mockito-inline $mockitoversion testImplementation
org.mockito:mockito-junit-jupiter $mockitoversion testImplementation
org.junit.jupiter:junit-jupiter-engine $junitversion testRuntimeOnly