Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / onecodex / assembly-annotation-tools
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/onecodex%2Fassembly-annotation-tools
Stars: 1
Forks: 1
Open Issues: 4
License: mit
Language: Dockerfile
Repo Size: 34.2 KB
Dependencies:
58
Created: over 5 years ago
Updated: about 1 month ago
Last pushed: over 1 year ago
Last synced: about 1 month ago
Files
Loading...
Readme
Loading...
Dependencies
- CMSeq ==1.0.1
- Cython ==0.29.21
- DendroPy ==4.4.0
- PhyloPhlAn ==3.0
- Pillow ==7.2.0
- bcbio-gff ==0.6.6
- biopython ==1.77
- certifi ==2020.6.20
- chardet ==3.0.4
- click ==7.1.2
- cycler ==0.10.0
- future ==0.18.2
- h5py ==2.10.0
- humann2 ==2.8.2
- idna ==2.10
- kiwisolver ==1.2.0
- matplotlib ==3.3.1
- numpy ==1.19.1
- pandas ==1.1.1
- pyparsing ==2.4.7
- pysam ==0.16.0.1
- python-dateutil ==2.8.1
- pytz ==2020.1
- requests ==2.24.0
- scipy ==1.5.2
- seaborn ==0.10.1
- six ==1.15.0
- urllib3 ==1.25.10
aragorn/1.2.38/Dockerfile
docker
- quay.io/refgenomics/builder latest build
bedtools/2.25.0/Dockerfile
docker
- quay.io/refgenomics/builder latest build
bioperl/Dockerfile
docker
- debian stretch-slim build
bowtie2/2.3.4.1/Dockerfile
docker
- quay.io/refgenomics/builder latest build
builder/Dockerfile
docker
- debian stretch-slim build
bwa/v0.7.17/Dockerfile
docker
- quay.io/refgenomics/builder latest build
diamond/v0.9.23/Dockerfile
docker
- quay.io/refgenomics/builder latest build
flash/1.2.11/Dockerfile
docker
- quay.io/refgenomics/builder latest build
freebayes/v1.2.0/Dockerfile
docker
- quay.io/refgenomics/builder latest build
hmmer/3.2.1/Dockerfile
docker
- quay.io/refgenomics/builder latest build
humann/2.8.2/Dockerfile
docker
- ubuntu 18.04 build
kmc/3.1.0/Dockerfile
docker
- quay.io/refgenomics/builder latest build
lighter/v1.1.1/Dockerfile
docker
- quay.io/refgenomics/builder latest build
minimap2/v2.14/Dockerfile
docker
- quay.io/refgenomics/builder latest build
minimap2/v2.17/Dockerfile
docker
- quay.io/refgenomics/builder latest build
prodigal/2.6.3/Dockerfile
docker
- quay.io/refgenomics/builder latest build
prokka/v1.13/Dockerfile
docker
- quay.io/refgenomics/bioperl latest build
prokka/v1.13.3/Dockerfile
docker
- quay.io/refgenomics/bioperl latest build
prokka/v1.14/Dockerfile
docker
- debian buster-slim build
prokka/v1.14.5/Dockerfile
docker
- debian buster-slim build
racon/1.3.1/Dockerfile
docker
- quay.io/refgenomics/builder latest build
samtools/1.9/Dockerfile
docker
- quay.io/refgenomics/builder latest build
seqtk/v1.3/Dockerfile
docker
- quay.io/refgenomics/builder latest build
snippy/v3.2/Dockerfile
docker
- quay.io/refgenomics/bioperl latest build
snippy/v4.3.6/Dockerfile
docker
- quay.io/refgenomics/bioperl latest build
spades/3.11.1/Dockerfile
docker
- quay.io/refgenomics/builder latest build
tbl2asn/latest/Dockerfile
docker
- quay.io/refgenomics/builder latest build
vcflib/v1.0.0-rc2/Dockerfile
docker
- quay.io/refgenomics/builder latest build
vcftools/v0.1.16/Dockerfile
docker
- quay.io/refgenomics/builder latest build
vt/0.57721/Dockerfile
docker
- quay.io/refgenomics/builder latest build