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GitHub / qqq-tech / BioAutoMATED

Automated machine learning for analyzing, interpreting, and designing biological sequences

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qqq-tech%2FBioAutoMATED

Fork of jackievaleri/BioAutoMATED
Stars: 0
Forks: 0
Open Issues: 0

License: mit
Language:
Repo Size: 4.62 GB
Dependencies: 234

Created: 10 months ago
Updated: 10 months ago
Last pushed: 11 months ago
Last synced: 25 days ago

Files

Readme

Dependencies

environment.yml conda

absl-py 0.13.0.*
appdirs 1.4.4.*
argon2-cffi 20.1.0.*
astor 0.8.1.*
async_generator 1.10.*
atk-1.0 2.36.0.*
attrs 21.2.0.*
backcall 0.2.0.*
backports 1.0.*
backports.functools_lru_cache 1.6.4.*
bleach 3.3.0.*
blosc 1.21.0.*
brotli 1.0.9.*
brotlipy 0.7.0.*
brunsli 0.1.*
bzip2 1.0.8.*
c-ares 1.17.1.*
ca-certificates 2021.5.30.*
cached-property 1.5.2.*
cached_property 1.5.2.*
cairo 1.16.0.*
cctools_osx-64 949.0.1.*
certifi 2021.5.30.*
cffi 1.14.5.*
cfitsio 3.470.*
charls 2.2.0.*
clang 11.1.0.*
clang-11 11.1.0.*
clang_osx-64 11.1.0.*
clangxx 11.1.0.*
clangxx_osx-64 11.1.0.*
cloudpickle 1.6.0.*
compiler-rt 11.1.0.*
compiler-rt_osx-64 11.1.0.*
cryptography 3.4.7.*
cycler 0.10.0.*
cytoolz 0.11.0.*
dask-core 2021.6.0.*
dataclasses 0.8.*
dbus 1.13.6.*
decorator 5.0.9.*
defusedxml 0.7.1.*
entrypoints 0.3.*
expat 2.4.1.*
ffmpeg 4.3.1.*
font-ttf-dejavu-sans-mono 2.37.*
font-ttf-inconsolata 3.000.*
font-ttf-source-code-pro 2.038.*
font-ttf-ubuntu 0.83.*
fontconfig 2.13.1.*
fonts-conda-ecosystem 1.*
fonts-conda-forge 1.*
freetype 2.10.4.*
fribidi 1.0.10.*
fsspec 2021.6.0.*
gdk-pixbuf 2.42.6.*
gettext 0.19.8.1.*
giflib 5.2.1.*
glib 2.68.3.*
glib-tools 2.68.3.*
gmp 6.2.1.*
gnutls 3.6.13.*
graphite2 1.3.13.*
graphviz 2.47.2.*
grpcio 1.38.0.*
gtk2 2.24.33.*
gts 0.7.6.*
harfbuzz 2.8.1.*
hdf5 1.10.6.*
icu 68.1.*
imagecodecs 2021.6.8.*
importlib-metadata 4.5.0.*
ipykernel 5.5.5.*
ipython 7.24.1.*
ipython_genutils 0.2.0.*
ipywidgets 7.6.3.*
jasper 1.900.1.*
jbig 2.1.*
jedi 0.18.0.*
jinja2 3.0.1.*
joblib 1.0.1.*
jpeg 9d.*
jsonschema 3.2.0.*
jupyter 1.0.0.*
jupyter_client 6.1.12.*
jupyter_console 6.4.0.*
jupyter_core 4.7.1.*
jupyterlab_pygments 0.1.2.*
jupyterlab_widgets 1.0.0.*
jxrlib 1.1.*
keras-applications 1.0.8.*
keras-preprocessing 1.1.2.*
kiwisolver 1.3.1.*
krb5 1.19.1.*
lame 3.100.*
lcms2 2.12.*
ld64_osx-64 530.*
ldid 2.1.2.*
lerc 2.2.1.*
libaec 1.0.5.*
libblas 3.9.0.*
libcblas 3.9.0.*
libclang 11.1.0.*
libclang-cpp11.1 11.1.0.*
libcurl 7.77.0.*
libcxx 11.1.0.*
libdeflate 1.7.*
libedit 3.1.20191231.*
libev 4.33.*
libffi 3.3.*
libgd 2.3.2.*
libgfortran5 9.3.0.*
libglib 2.68.3.*
libgpuarray 0.7.6.*
libiconv 1.16.*
liblapack 3.9.0.*
liblapacke 3.9.0.*
libllvm11 11.1.0.*
libllvm12 12.0.0.*
libnghttp2 1.43.0.*
libopenblas 0.3.15.*
libopencv 4.5.2.*
libpng 1.6.37.*
libpq 13.3.*
libprotobuf 3.15.8.*
librsvg 2.50.7.*
libsodium 1.0.18.*
libssh2 1.9.0.*
libtiff 4.3.0.*
libtool 2.4.6.*
libwebp 1.2.0.*
libwebp-base 1.2.0.*
libxml2 2.9.12.*
libzopfli 1.0.3.*
llvm-openmp 11.1.0.*
llvm-tools 11.1.0.*
locket 0.2.0.*
lz4-c 1.9.3.*
mako 1.1.4.*
markdown 3.3.4.*
markupsafe 2.0.1.*
matplotlib 3.4.2.*
matplotlib-base 3.4.2.*
matplotlib-inline 0.1.2.*
mistune 0.8.4.*
mysql-common 8.0.25.*
mysql-libs 8.0.25.*
nbclient 0.5.3.*
nbconvert 6.0.7.*
nbformat 5.1.3.*
ncurses 6.2.*
nest-asyncio 1.5.1.*
nettle 3.6.*
networkx 2.5.*
notebook 6.4.0.*
nspr 4.30.*
nss 3.67.*
olefile 0.46.*
opencv 4.5.2.*
openh264 2.1.1.*
openjpeg 2.4.0.*
openssl 1.1.1k.*
packaging 20.9.*
pango 1.48.5.*
parso 0.8.2.*
partd 1.2.0.*
pcre 8.45.*
pexpect 4.8.0.*
pickleshare 0.7.5.*
pillow 8.2.0.*
pixman 0.40.0.*
pooch 1.4.0.*
prometheus_client 0.11.0.*
prompt-toolkit 3.0.19.*
prompt_toolkit 3.0.19.*
protobuf 3.15.8.*
ptyprocess 0.7.0.*
py-opencv 4.5.2.*
pycparser 2.20.*
pygments 2.9.0.*
pygpu 0.7.6.*
pyopenssl 20.0.1.*
pyparsing 2.4.7.*
pyqt 5.12.3.*
pyqt-impl 5.12.3.*
pyqt5-sip 4.19.18.*
pyqtchart 5.12.*
pyqtwebengine 5.12.1.*
pyrsistent 0.17.3.*
pysocks 1.7.1.*
python 3.7.10.*
python-dateutil 2.8.1.*
python_abi 3.7.*
pytz 2021.1.*
pywavelets 1.1.1.*
pyzmq 22.1.0.*
qt 5.12.9.*
qtconsole 5.1.0.*
qtpy 1.9.0.*
readline 8.1.*
send2trash 1.5.0.*
setuptools 49.6.0.*
six 1.16.0.*
snappy 1.1.8.*
sqlite 3.35.5.*
tapi 1100.0.11.*
tensorboard 1.13.1.*
tensorflow-base 1.13.1.*
tensorflow-estimator 1.13.0.*
termcolor 1.1.0.*
terminado 0.10.1.*
testpath 0.5.0.*
theano 1.0.5.*
threadpoolctl 2.1.0.*
tifffile 2021.6.14.*
tk 8.6.10.*
toolz 0.11.1.*
tornado 6.1.*
traitlets 5.0.5.*
typing_extensions 3.10.0.0.*
wcwidth 0.2.5.*
webencodings 0.5.1.*
werkzeug 2.0.1.*
wheel 0.36.2.*
widgetsnbextension 3.5.1.*
x264 1!161.3030.*
xz 5.2.5.*
yaml 0.2.5.*
zeromq 4.3.4.*
zfp 0.5.5.*
zipp 3.4.1.*
zlib 1.2.11.*
zstd 1.5.0.*

Dockerfile docker

ubuntu 18.04 build