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GitHub / rockdeme / chrysalis
Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rockdeme%2Fchrysalis
Stars: 14
Forks: 0
Open Issues: 2
License: bsd-3-clause
Language: Jupyter Notebook
Repo Size: 54.9 MB
Dependencies:
25
Created: about 1 year ago
Updated: about 2 months ago
Last pushed: 5 months ago
Last synced: about 2 months ago
Topics: bioinformatics, machine-learning, spatial-transcriptomics, visualization
Files
Dependencies
- chrysalis-st *
- myst_parser ==0.18.1
- nbsphinx ==0.9.2
- sphinx ==5.3.0
- sphinx_rtd_theme ==1.2.2
- archetypes *
- matplotlib *
- numpy *
- pandas *
- pysal *
- scanpy *
- scikit_learn *
- scipy *
- seaborn *
- tqdm *
- archetypes *
- matplotlib *
- numpy *
- pandas *
- pysal *
- scanpy *
- scikit_learn *
- scipy *
- seaborn *
- tqdm *