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GitHub / rubenvillar / nextflow

A DSL for data-driven computational pipelines

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rubenvillar%2Fnextflow

Fork of nextflow-io/nextflow
Stars: 0
Forks: 0
Open Issues: 0

License: apache-2.0
Language: Groovy
Repo Size: 76.2 MB
Dependencies: 109

Created: about 2 years ago
Updated: about 1 year ago
Last pushed: almost 2 years ago
Last synced: about 1 year ago

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Dependencies

buildSrc/build.gradle maven

com.amazonaws:aws-java-sdk-s3 1.11.542 implementation
com.google.code.gson:gson 2.8.6 implementation

modules/nextflow/build.gradle maven

ch.grengine:grengine 1.3.0 api
ch.qos.logback:logback-classic 1.2.11 api
ch.qos.logback:logback-core 1.2.11 api
com.beust:jcommander 1.35 api
com.esotericsoftware.kryo:kryo 2.24.0 api
commons-codec:commons-codec 1.10 api
commons-io:commons-io 2.11.0 api
commons-lang:commons-lang 2.6 api
dev.failsafe:failsafe 3.1.0 api
javax.activation:activation 1.1.1 api
javax.mail:mail 1.4.7 api
jline:jline 2.9 api
org.codehaus.gpars:gpars 1.2.1 api
org.codehaus.groovy:groovy 3.0.10 api
org.codehaus.groovy:groovy-json 3.0.10 api
org.codehaus.groovy:groovy-nio 3.0.10 api
org.codehaus.groovy:groovy-templates 3.0.10 api
org.codehaus.groovy:groovy-xml 3.0.10 api
org.eclipse.jgit:org.eclipse.jgit 6.1.0.202203080745-r api
org.iq80.leveldb:leveldb 0.12 api
org.jsoup:jsoup 1.14.3 api
org.pf4j:pf4j 3.4.1 api
org.slf4j:jcl-over-slf4j 1.7.36 api
org.slf4j:jul-to-slf4j 1.7.36 api
org.slf4j:log4j-over-slf4j 1.7.36 api
org.yaml:snakeyaml 1.29 api
org.subethamail:subethasmtp 3.1.7 testImplementation

modules/nf-commons/build.gradle maven

ch.qos.logback:logback-classic 1.2.11 api
com.google.guava:guava 31.1-jre api
commons-lang:commons-lang 2.6 api
org.codehaus.groovy:groovy 3.0.10 api
org.codehaus.groovy:groovy-nio 3.0.10 api
org.pf4j:pf4j 3.4.1 api
org.pf4j:pf4j-update 2.3.0 api

modules/nf-httpfs/build.gradle maven

ch.qos.logback:logback-classic 1.2.11 api
com.esotericsoftware.kryo:kryo 2.24.0 api
org.codehaus.groovy:groovy 3.0.10 api
org.codehaus.groovy:groovy-nio 3.0.10 api
com.github.tomakehurst:wiremock 1.57 testImplementation
com.github.tomjankes:wiremock-groovy 0.2.0 testImplementation
org.codehaus.groovy:groovy-json 3.0.10 testImplementation

plugins/nf-amazon/build.gradle maven

com.amazonaws:aws-java-sdk-batch 1.12.129 api
com.amazonaws:aws-java-sdk-codecommit 1.12.129 api
com.amazonaws:aws-java-sdk-ec2 1.12.129 api
com.amazonaws:aws-java-sdk-ecs 1.12.129 api
com.amazonaws:aws-java-sdk-iam 1.12.129 api
com.amazonaws:aws-java-sdk-logs 1.12.129 api
com.amazonaws:aws-java-sdk-s3 1.12.129 api
javax.xml.bind:jaxb-api 2.3.1 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation

plugins/nf-azure/build.gradle maven

com.azure:azure-storage-blob 12.9.0 api
com.microsoft.azure:azure-batch 9.0.0 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation

plugins/nf-codecommit/build.gradle maven

com.amazonaws:aws-java-sdk-codecommit 1.12.129 api
javax.xml.bind:jaxb-api 2.3.1 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation

plugins/nf-console/build.gradle maven

org.codehaus.groovy:groovy-console 3.0.10 api
org.codehaus.groovy:groovy-swing 3.0.10 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation

plugins/nf-ga4gh/build.gradle maven

com.google.code.gson:gson 2.8.1 api
com.squareup.okhttp:logging-interceptor 2.7.5 api
com.squareup.okhttp:okhttp 2.7.5 api
io.swagger:swagger-annotations 1.5.15 api
javax.annotation:javax.annotation-api 1.3.2 api
joda-time:joda-time 2.9.9 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation

plugins/nf-google/build.gradle maven

com.google.apis:google-api-services-lifesciences v2beta-rev20210527-1.31.5 api
com.google.auth:google-auth-library-oauth2-http 0.18.0 api
com.google.cloud:google-cloud-logging 3.8.0 api
com.google.cloud:google-cloud-nio 0.121.2 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation

plugins/nf-sqldb/build.gradle maven

com.h2database:h2 1.4.200 api
mysql:mysql-connector-java 8.0.22 api
org.codehaus.groovy:groovy-sql 3.0.10 api
org.duckdb:duckdb_jdbc 0.3.0 api
org.mariadb.jdbc:mariadb-java-client 2.7.0 api
org.postgresql:postgresql 42.2.23 api
org.xerial:sqlite-jdbc 3.36.0.3 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation

plugins/nf-tower/build.gradle maven

com.fasterxml.jackson.core:jackson-databind 2.12.5 api
com.fasterxml.jackson.dataformat:jackson-dataformat-yaml 2.12.5 api
org.codehaus.groovy:groovy-yaml 3.0.10 api
org.pf4j:pf4j 3.4.1 compileOnly
org.slf4j:slf4j-api 1.7.10 compileOnly
org.codehaus.groovy:groovy 3.0.10 testImplementation
org.codehaus.groovy:groovy-nio 3.0.10 testImplementation