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GitHub / seattleflu / id3c
Data logistics system enabling real-time pathogen surveillance. Built for the Seattle Flu Study.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/seattleflu%2Fid3c
Stars: 22
Forks: 5
Open Issues: 11
License: mit
Language: PLpgSQL
Repo Size: 1.74 MB
Dependencies:
110
Created: about 5 years ago
Updated: 10 days ago
Last pushed: 5 months ago
Last synced: 10 days ago
Commit Stats
Commits: 924
Authors: 16
Mean commits per author: 57.75
Development Distribution Score: 0.565
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/seattleflu/id3c
Topics: cli, data-distribution, etl, fhir, id3c, infectious-disease, plpgsql, postgres, postgresql, python, redcap, rest-api, scan-study, seattle-flu-study, sqitch, sql
Files
Dependencies
- We *
- cachetools *
- click *
- colorama *
- deepdiff *
- fhir.resources *
- fiona *
- flask *
- fsspec *
- google-api-python-client *
- jsonschema *
- more-itertools *
- oauth2client *
- pandas *
- psycopg2 *
- pyyaml *
- requests *
- s3fs *
- setuptools *
- smartystreets-python-sdk *
- types-python-dateutil *
- typing_extensions *
- xlrd *
- actions/checkout v2 composite
- actions/setup-python v2 composite
- aiobotocore ==2.3.2
- aiohttp ==3.8.1
- aioitertools ==0.10.0
- aiosignal ==1.2.0
- astroid ==2.11.5
- async-timeout ==4.0.2
- attrs ==21.4.0
- botocore ==1.24.21
- cachetools ==5.2.0
- certifi ==2022.5.18.1
- charset-normalizer ==2.0.12
- click ==7.1.2
- click-plugins ==1.1.1
- cligj ==0.7.2
- colorama ==0.4.4
- deepdiff ==5.8.1
- dill ==0.3.5.1
- fhir.resources ==5.1.1
- fiona ==1.8.21
- flask ==2.0.3
- frozenlist ==1.3.0
- fsspec ==2022.5.0
- google-api-core ==2.8.1
- google-api-python-client ==2.49.0
- google-auth ==2.6.6
- google-auth-httplib2 ==0.1.0
- googleapis-common-protos ==1.56.2
- httplib2 ==0.20.4
- id3c *
- idna ==3.3
- iniconfig ==1.1.1
- isodate ==0.6.1
- isort ==5.10.1
- itsdangerous ==2.1.2
- jinja2 ==3.1.2
- jmespath ==1.0.0
- jsonschema ==4.5.1
- lazy-object-proxy ==1.7.1
- markupsafe ==2.1.1
- mccabe ==0.7.0
- more-itertools ==8.13.0
- multidict ==6.0.2
- munch ==2.5.0
- mypy ==0.960
- mypy-extensions ==0.4.3
- numpy ==1.22.4
- oauth2client ==3.0.0
- ordered-set ==4.1.0
- packaging ==21.3
- pandas ==1.1.5
- platformdirs ==2.5.2
- pluggy ==1.0.0
- protobuf ==3.20.1
- psycopg2 ==2.9.3
- py ==1.11.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pylint ==2.13.9
- pyparsing ==3.0.9
- pyrsistent ==0.18.1
- pytest ==7.1.2
- python-dateutil ==2.8.2
- pytz ==2022.1
- pyyaml ==6.0
- requests ==2.27.1
- rsa ==4.8
- s3fs ==2022.5.0
- setuptools ==62.3.2
- six ==1.16.0
- smartystreets-python-sdk ==4.10.11
- sqlparse ==0.4.2
- tomli ==2.0.1
- types-pkg-resources ==0.1.3
- types-python-dateutil ==2.8.17
- types-pyyaml ==6.0.7
- types-requests ==2.27.29
- types-urllib3 ==1.26.15
- typing-extensions ==4.2.0
- uritemplate ==4.1.1
- urllib3 ==1.26.9
- werkzeug ==2.1.2
- wrapt ==1.14.1
- xlrd ==1.2.0
- yarl ==1.7.2