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GitHub / segrelab / MiCoNE-pipeline-paper
The source code for the MIND pipeline paper
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/segrelab%2FMiCoNE-pipeline-paper
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: HTML
Repo Size: 61.2 MB
Dependencies:
159
Created: almost 6 years ago
Updated: 2 months ago
Last pushed: 9 months ago
Last synced: 2 months ago
Topics: 16s-rrna, data-analysis, microbiome, qiime, qiime2
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Dependencies
- black ^21.10b0 develop
- flake8 ^4.0.1 develop
- jupyter ^1.0.0 develop
- mypy ^0.910 develop
- pylint ^2.11.1 develop
- biom-format ^2.1.10
- biopython ^1.79
- ete3 ^3.1.2
- matplotlib ^3.5.1
- micone ^0.11.5
- mlxtend ^0.19.0
- numpy ^1.21.4
- pandas ^1.3.4
- python >=3.8,<3.11
- scikit-bio ^0.5.7
- seaborn ^0.11.2
- tabulate ^0.8.9
- tqdm ^4.62.3
- tqdm-multiprocess ^0.0.11