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GitHub / sheffield-bioinformatics-core / NanoCLUST

NanoCLUST is an analysis pipeline for UMAP-based classification of amplicon-based full-length 16S rRNA nanopore reads

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sheffield-bioinformatics-core%2FNanoCLUST

Fork of genomicsITER/NanoCLUST
Stars: 1
Forks: 0
Open Issues: 0

License: mit
Language: Nextflow
Repo Size: 6.88 MB
Dependencies: 65

Created: over 2 years ago
Updated: 7 months ago
Last pushed: 5 months ago
Last synced: 5 months ago

Files
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    Readme
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    Dependencies
    .github/workflows/ci.yml actions
    .github/workflows/linting.yml actions
    conda_envs/cluster_plot_pool/environment.yml conda
    conda_envs/consensus_classification/environment.yml conda
    conda_envs/demultiplex/environment.yml conda
    conda_envs/demultiplex_porechop/environment.yml conda
    conda_envs/draft_selection/environment.yml conda
    conda_envs/fastqc/environment.yml conda
    conda_envs/generate_reports/environment.yml conda
    conda_envs/kmer_freqs/environment.yml conda
    conda_envs/medaka_pass/environment.yml conda
    conda_envs/output_documentation/environment.yml conda
    conda_envs/qc_fastp/environment.yml conda
    conda_envs/racon_pass/environment.yml conda
    conda_envs/read_clustering/environment.yml conda
    conda_envs/read_correction/environment.yml conda
    conda_envs/split_by_cluster/environment.yml conda
    conda_envs/cluster_plot_pool/Dockerfile docker
    conda_envs/consensus_classification/Dockerfile docker
    conda_envs/demultiplex/Dockerfile docker
    conda_envs/demultiplex_porechop/Dockerfile docker
    conda_envs/draft_selection/Dockerfile docker
    conda_envs/fastqc/Dockerfile docker
    conda_envs/kmer_freqs/Dockerfile docker
    conda_envs/medaka_pass/Dockerfile docker
    conda_envs/output_documentation/Dockerfile docker
    conda_envs/qc_fastp/Dockerfile docker
    conda_envs/racon_pass/Dockerfile docker
    conda_envs/read_clustering/Dockerfile docker
    conda_envs/read_correction/Dockerfile docker
    conda_envs/split_by_cluster/Dockerfile docker