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GitHub / sumiya-kuroda / EMsegmentation-mito
EM segmentation of mitochondria from SNEMI3D data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/sumiya-kuroda%2FEMsegmentation-mito
Stars: 5
Forks: 2
Open Issues: 0
License: None
Language: Jupyter Notebook
Repo Size: 96 MB
Dependencies:
208
Created: almost 4 years ago
Updated: 11 months ago
Last pushed: almost 4 years ago
Last synced: 11 months ago
Topics: connectome, deep-learning, mitochondria, segmentation, u-net
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Dependencies
Pipfile
pypi
- Cycler ==0.10.0
- Jinja2 ==2.11.2
- Keras-Applications ==1.0.8
- Keras-Preprocessing ==1.1.2
- Markdown ==3.2.2
- MarkupSafe ==1.1.1
- Pillow ==7.2.0
- PyWavelets ==1.1.1
- PyYAML ==5.3.1
- Pygments ==2.6.1
- QtPy ==1.9.0
- Send2Trash ==1.5.0
- Shapely ==1.7.0
- Werkzeug ==1.0.1
- absl-py ==0.10.0
- albumentations ==0.4.6
- argon2-cffi ==20.1.0
- argparse *
- astor ==0.8.1
- attrs ==19.3.0
- backcall ==0.2.0
- bleach ==3.1.5
- cachetools ==4.1.1
- certifi ==2020.6.20
- cffi ==1.14.2
- chardet ==3.0.4
- decorator ==4.4.2
- defusedxml ==0.6.0
- entrypoints ==0.3
- future ==0.18.2
- gast ==0.2.2
- google-auth ==1.20.1
- google-auth-oauthlib ==0.4.1
- google-pasta ==0.2.0
- grpcio ==1.31.0
- h5py ==2.10.0
- idna ==2.10
- imagedataaugmentor https://github.com/mjkvaak/ImageDataAugmentor#b91cac2f9ef44bbbf4f399f22e754d212966a2f9
- imageio ==2.9.0
- imgaug ==0.4.0
- importlib-metadata ==1.7.0
- install ==1.3.3
- ipykernel ==5.3.4
- ipython ==7.16.1
- ipython_genutils ==0.2.0
- ipywidgets ==7.5.1
- jedi ==0.17.2
- jsonschema ==3.2.0
- jupyter ==1.0.0
- jupyter-client ==6.1.6
- jupyter-console ==6.1.0
- jupyter-core ==4.6.3
- jupytext ==1.5.2
- kiwisolver ==1.2.0
- matplotlib ==3.3.1
- mistune ==0.8.4
- nbconvert ==5.6.1
- nbformat ==5.0.7
- networkx ==2.4
- notebook ==6.1.3
- numpy ==1.19.1
- oauthlib ==3.1.0
- opencv-python ==4.4.0.42
- opt-einsum ==3.3.0
- pandocfilters ==1.4.2
- parso ==0.7.1
- pexpect ==4.8.0
- pickleshare ==0.7.5
- prometheus-client ==0.8.0
- prompt-toolkit ==3.0.6
- protobuf ==3.13.0
- ptyprocess ==0.6.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pycparser ==2.20
- pyparsing ==2.4.7
- pyrsistent ==0.16.0
- python-dateutil ==2.8.1
- pyzmq ==19.0.2
- qtconsole ==4.7.6
- requests ==2.24.0
- requests-oauthlib ==1.3.0
- rsa ==4.6
- scikit-image ==0.17.2
- scipy ==1.4.1
- six ==1.15.0
- tensorboard ==2.1.1
- tensorflow ==2.1.0
- tensorflow-estimator ==2.1.0
- termcolor ==1.1.0
- terminado ==0.8.3
- testpath ==0.4.4
- tifffile ==2020.8.13
- toml ==0.10.1
- tornado ==6.0.4
- tqdm ==4.48.2
- traitlets ==4.3.3
- urllib3 ==1.25.10
- wcwidth ==0.2.5
- webencodings ==0.5.1
- widgetsnbextension ==3.5.1
- wrapt ==1.12.1
- zipp ==3.1.0
requirements.txt
pypi
- absl-py ==0.10.0
- albumentations ==0.4.6
- argon2-cffi ==20.1.0
- argparse ==1.4.0
- astor ==0.8.1
- attrs ==19.3.0
- backcall ==0.2.0
- bleach ==3.1.5
- cachetools ==4.1.1
- certifi ==2020.6.20
- cffi ==1.14.2
- chardet ==3.0.4
- cycler ==0.10.0
- decorator ==4.4.2
- defusedxml ==0.6.0
- entrypoints ==0.3
- future ==0.18.2
- gast ==0.2.2
- google-auth ==1.20.1
- google-auth-oauthlib ==0.4.1
- google-pasta ==0.2.0
- grpcio ==1.31.0
- h5py ==2.10.0
- idna ==2.10
- imagedataaugmentor b91cac2f9ef44bbbf4f399f22e754d212966a2f9
- imageio ==2.9.0
- imgaug ==0.4.0
- importlib-metadata ==1.7.0
- install ==1.3.3
- ipykernel ==5.3.4
- ipython ==7.16.1
- ipython-genutils ==0.2.0
- ipywidgets ==7.5.1
- jedi ==0.17.2
- jinja2 ==2.11.2
- jsonschema ==3.2.0
- jupyter ==1.0.0
- jupyter-client ==6.1.6
- jupyter-console ==6.1.0
- jupyter-core ==4.6.3
- jupytext ==1.5.2
- keras-applications ==1.0.8
- keras-preprocessing ==1.1.2
- kiwisolver ==1.2.0
- markdown ==3.2.2
- markupsafe ==1.1.1
- matplotlib ==3.3.1
- mistune ==0.8.4
- nbconvert ==5.6.1
- nbformat ==5.0.7
- networkx ==2.4
- notebook ==6.1.3
- numpy ==1.19.1
- oauthlib ==3.1.0
- opencv-python ==4.4.0.42
- opt-einsum ==3.3.0
- packaging ==20.4
- pandocfilters ==1.4.2
- parso ==0.7.1
- pexpect ==4.8.0
- pickleshare ==0.7.5
- pillow ==7.2.0
- prometheus-client ==0.8.0
- prompt-toolkit ==3.0.6
- protobuf ==3.13.0
- ptyprocess ==0.6.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pycparser ==2.20
- pygments ==2.6.1
- pyparsing ==2.4.7
- pyrsistent ==0.16.0
- python-dateutil ==2.8.1
- pywavelets ==1.1.1
- pyyaml ==5.3.1
- pyzmq ==19.0.2
- qtconsole ==4.7.6
- qtpy ==1.9.0
- requests ==2.24.0
- requests-oauthlib ==1.3.0
- rsa ==4.6
- scikit-image ==0.17.2
- scipy ==1.4.1
- send2trash ==1.5.0
- shapely ==1.7.0
- six ==1.15.0
- tensorboard ==2.1.1
- tensorflow ==2.1.0
- tensorflow-estimator ==2.1.0
- termcolor ==1.1.0
- terminado ==0.8.3
- testpath ==0.4.4
- tifffile ==2020.8.13
- toml ==0.10.1
- tornado ==6.0.4
- tqdm ==4.48.2
- traitlets ==4.3.3
- urllib3 ==1.25.10
- wcwidth ==0.2.5
- webencodings ==0.5.1
- werkzeug ==1.0.1
- wheel ==0.35.1
- widgetsnbextension ==3.5.1
- wrapt ==1.12.1
- zipp ==3.1.0