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GitHub / th789 / fflmediation
R package to predict gene feed forward loops using mediation analysis. Analyses integrate observed miRNA and mRNA expression data and database information on gene interactions.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/th789%2Ffflmediation
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: R
Repo Size: 71.7 MB
Dependencies:
13
Created: over 4 years ago
Updated: 4 months ago
Last pushed: almost 2 years ago
Last synced: 4 months ago
Topics: gene-expression, gene-interaction-networks, gene-network, gene-regulation, gene-regulatory-network, mediation-analysis, mirna-seq, mrna-seq, transcription-factors
Files
Dependencies
- R >= 3.5.0 depends
- AnnotationDbi * imports
- boot * imports
- doParallel * imports
- fdrtool * imports
- foreach * imports
- iterators * imports
- miRBaseConverter * imports
- org.Hs.eg.db * imports
- parallel * imports
- stats * imports
- knitr * suggests
- rmarkdown * suggests