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GitHub / trandinhnguyen / openvaccine-rnadegrade

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/trandinhnguyen%2Fopenvaccine-rnadegrade

Stars: 0
Forks: 0
Open Issues: 0

License: None
Language: Python
Repo Size: 254 KB
Dependencies: 363

Created: 5 months ago
Updated: 5 months ago
Last pushed: 2 months ago
Last synced: about 1 month ago

Files

Readme

Dependencies

environment.yml conda

_anaconda_depends 2020.07
_libgcc_mutex 0.1
alabaster 0.7.12
anaconda custom
anaconda-client 1.7.2
anaconda-project 0.8.4
argh 0.26.2
argon2-cffi 20.1.0
asn1crypto 1.4.0
astroid 2.4.2
astropy 4.0.2
async_generator 1.10
atomicwrites 1.4.0
attrs 20.2.0
autopep8 1.5.4
babel 2.8.0
backcall 0.2.0
backports 1.0
backports.shutil_get_terminal_size 1.0.0
beautifulsoup4 4.9.3
bitarray 1.6.0
bkcharts 0.2
blas 1.0
bleach 3.2.1
blosc 1.20.1
bokeh 2.2.3
boto 2.49.0
bottleneck 1.3.2
brotlipy 0.7.0
bzip2 1.0.8
ca-certificates 2020.10.14
cairo 1.14.12
catalogue 1.0.0
certifi 2020.6.20
cffi 1.14.3
chardet 3.0.4
click 7.1.2
cloudpickle 1.6.0
clyent 1.2.2
colorama 0.4.4
contextlib2 0.6.0.post1
cryptography 3.1.1
cudatoolkit 10.1.243
curl 7.71.1
cymem 2.0.3
cython 0.29.21
cython-blis 0.4.1
cytoolz 0.11.0
dask 2.30.0
dask-core 2.30.0
dbus 1.13.18
decorator 4.4.2
defusedxml 0.6.0
diff-match-patch 20200713
distributed 2.30.0
docutils 0.16
entrypoints 0.3
et_xmlfile 1.0.1
expat 2.2.10
fastai 2.1.7
fastcache 1.1.0
fastcore 1.3.9
fastprogress 1.0.0
filelock 3.0.12
flake8 3.8.4
flask 1.1.2
fontconfig 2.13.0
freetype 2.10.4
fribidi 1.0.10
fsspec 0.8.3
future 0.18.2
get_terminal_size 1.0.0
gevent 20.9.0
gh 1.2.1
git 2.23.0
glib 2.66.1
glob2 0.7
gmp 6.1.2
gmpy2 2.0.8
graphite2 1.3.14
greenlet 0.4.17
gst-plugins-base 1.14.0
gstreamer 1.14.0
h5py 2.10.0
harfbuzz 2.4.0
hdf5 1.10.4
heapdict 1.0.1
html5lib 1.1
icu 58.2
idna 2.10
imageio 2.9.0
imagesize 1.2.0
importlib-metadata 2.0.0
importlib_metadata 2.0.0
iniconfig 1.1.1
intel-openmp 2020.2
intervaltree 3.1.0
ipykernel 5.3.4
ipython 7.18.1
ipython_genutils 0.2.0
ipywidgets 7.5.1
isort 5.6.4
itsdangerous 1.1.0
jbig 2.1
jdcal 1.4.1
jedi 0.17.1
jeepney 0.4.3
jinja2 2.11.2
joblib 0.17.0
jpeg 9b
json5 0.9.5
jsonschema 3.0.2
jupyter 1.0.0
jupyter_client 6.1.7
jupyter_console 6.2.0
jupyter_core 4.6.3
jupyterlab 2.2.6
jupyterlab_pygments 0.1.2
jupyterlab_server 1.2.0
keyring 21.4.0
krb5 1.18.2
lazy-object-proxy 1.4.3
lcms2 2.11
ld_impl_linux-64 2.33.1
libarchive 3.4.2
libcurl 7.71.1
libedit 3.1.20191231
libffi 3.3
libgcc-ng 9.1.0
libgfortran-ng 7.3.0
liblief 0.10.1
libllvm10 10.0.1
libllvm9 9.0.1
libpng 1.6.37
libsodium 1.0.18
libspatialindex 1.9.3
libssh2 1.9.0
libstdcxx-ng 9.1.0
libtiff 4.1.0
libtool 2.4.6
libuuid 1.0.3
libuv 1.40.0
libxcb 1.14
libxml2 2.9.10
libxslt 1.1.34
llvmlite 0.34.0
locket 0.2.0
lxml 4.6.1
lz4-c 1.9.2
lzo 2.10
markupsafe 1.1.1
matplotlib 3.3.2
matplotlib-base 3.3.2
mccabe 0.6.1
mistune 0.8.4
mkl 2020.2
mkl-service 2.3.0
mkl_fft 1.2.0
mkl_random 1.1.1
mock 4.0.2
more-itertools 8.5.0
mpc 1.1.0
mpfr 4.0.2
mpmath 1.1.0
msgpack-python 1.0.0
multipledispatch 0.6.0
murmurhash 1.0.2
nbclient 0.5.1
nbconvert 6.0.7
nbformat 5.0.8
ncurses 6.2
nest-asyncio 1.4.1
networkx 2.5
ninja 1.10.1
nltk 3.5
nose 1.3.7
notebook 6.1.4
numba 0.51.2
numexpr 2.7.1
numpy-base 1.19.1
numpydoc 1.1.0
olefile 0.46
openpyxl 3.0.5
openssl 1.1.1h
packaging 20.4
pandas 1.1.3
pandoc 2.11
pandocfilters 1.4.2
pango 1.45.3
parso 0.7.0
partd 1.1.0
patchelf 0.12
path 15.0.0
path.py 12.5.0
pathlib2 2.3.5
pathtools 0.1.2
patsy 0.5.1
pcre 8.44
pep8 1.7.1
perl 5.26.2
pexpect 4.8.0
pickleshare 0.7.5
pip 20.2.4
pixman 0.40.0
pkginfo 1.6.0
plac 0.9.6
pluggy 0.13.1
ply 3.11
preshed 3.0.2
prometheus_client 0.8.0
prompt-toolkit 3.0.8
prompt_toolkit 3.0.8
psutil 5.7.2
ptyprocess 0.6.0
py 1.9.0
py-lief 0.10.1
pycodestyle 2.6.0
pycosat 0.6.3
pycparser 2.20
pycurl 7.43.0.6
pydocstyle 5.1.1
pyflakes 2.2.0
pygments 2.7.1
pylint 2.6.0
pyodbc 4.0.30
pyopenssl 19.1.0
pyparsing 2.4.7
pyqt 5.9.2
pyrsistent 0.17.3
pysocks 1.7.1
pytables 3.6.1
pytest 6.1.1
python 3.8.5
python-dateutil 2.8.1
python-jsonrpc-server 0.4.0
python-language-server 0.35.1
python-libarchive-c 2.9
pytorch 1.7.0
pytz 2020.1
pywavelets 1.1.1
pyxdg 0.26
pyzmq 19.0.2
qdarkstyle 2.8.1
qt 5.9.7
qtawesome 1.0.1
qtconsole 4.7.7
qtpy 1.9.0
readline 8.0
regex 2020.10.15
requests 2.24.0
ripgrep 12.1.1
rope 0.18.0
rtree 0.9.4
ruamel_yaml 0.15.87
scikit-learn 0.23.2
seaborn 0.11.0
secretstorage 3.1.2
send2trash 1.5.0
setuptools 50.3.0
simplegeneric 0.8.1
singledispatch 3.4.0.3
sip 4.19.13
six 1.15.0
snappy 1.1.8
snowballstemmer 2.0.0
sortedcollections 1.2.1
sortedcontainers 2.2.2
soupsieve 2.0.1
spacy 2.3.2
sphinx 3.2.1
sphinxcontrib 1.0
sphinxcontrib-applehelp 1.0.2
sphinxcontrib-devhelp 1.0.2
sphinxcontrib-htmlhelp 1.0.3
sphinxcontrib-jsmath 1.0.1
sphinxcontrib-qthelp 1.0.3
sphinxcontrib-serializinghtml 1.1.4
sphinxcontrib-websupport 1.2.4
spyder 4.1.5
spyder-kernels 1.9.4
sqlalchemy 1.3.19
sqlite 3.33.0
srsly 1.0.2
statsmodels 0.12.0
sympy 1.6.2
tbb 2020.3
tblib 1.7.0
terminado 0.9.1
testpath 0.4.4
thinc 7.4.1
threadpoolctl 2.1.0
tk 8.6.10
toml 0.10.1
toolz 0.11.1
torchaudio 0.7.0
torchvision 0.8.1
tornado 6.0.4
tqdm 4.50.2
traitlets 5.0.5
typing_extensions 3.7.4.3
ujson 4.0.1
unicodecsv 0.14.1
unixodbc 2.3.9
urllib3 1.25.11
wasabi 0.8.0
watchdog 0.10.3
wcwidth 0.2.5
webencodings 0.5.1
werkzeug 1.0.1
wheel 0.35.1
widgetsnbextension 3.5.1
wrapt 1.11.2
wurlitzer 2.0.1
xlrd 1.2.0
xlsxwriter 1.3.7
xlwt 1.3.0
xz 5.2.5
yaml 0.2.5
yapf 0.30.0
zeromq 4.3.3
zict 2.0.0
zipp 3.3.1
zlib 1.2.11
zope 1.0
zope.event 4.5.0
zope.interface 5.1.2
zstd 1.4.5

requirements.txt pypi

Pygments ==2.17.2
matplotlib ==3.8.2
matplotlib-inline ==0.1.6
numpy ==1.26.2
packaging ==23.2
pandas ==2.1.4
parso ==0.8.3
pexpect ==4.9.0
pillow ==10.2.0
platformdirs ==4.1.0
prompt-toolkit ==3.0.43
psutil ==5.9.7
ptyprocess ==0.7.0
pure-eval ==0.2.2
pyparsing ==3.1.1
python-dateutil ==2.8.2
pytz ==2023.3.post1
pyzmq ==25.1.2
requests ==2.31.0
scikit-learn ==1.3.2
scipy ==1.11.4
six ==1.16.0
stack-data ==0.6.3
sympy ==1.12
threadpoolctl ==3.2.0
torch ==2.1.2
torchaudio ==2.1.2
torchvision ==0.16.2
tornado ==6.4
tqdm ==4.66.1
traitlets ==5.14.1
triton ==2.1.0
typing_extensions ==4.9.0
tzdata ==2023.4
urllib3 ==2.1.0
wcwidth ==0.2.13