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GitHub / umccr / htsget-rs

A server implementation of the htsget protocol for bioinformatics in Rust

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/umccr%2Fhtsget-rs

Stars: 36
Forks: 9
Open Issues: 22

License: mit
Language: Rust
Repo Size: 40.4 MB
Dependencies: 579

Created: about 3 years ago
Updated: 20 days ago
Last pushed: about 1 month ago
Last synced: about 1 month ago

Commit Stats

Commits: 356
Authors: 9
Mean commits per author: 39.56
Development Distribution Score: 0.334
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/umccr/htsget-rs

Topics: aws-lambda, bioinfo, bioinformatics, htsget, noodles, rust, serverless

Files

Readme

Dependencies

deploy/package.json npm

@types/node ^18.11.18 development
aws-cdk ^2.64.0 development
prettier 2.8.3 development
typescript ^4.9.4 development
@aws-cdk/aws-apigatewayv2-alpha ^2.59.0-alpha.0
@aws-cdk/aws-apigatewayv2-authorizers-alpha ^2.59.0-alpha.0
@aws-cdk/aws-apigatewayv2-integrations-alpha ^2.59.0-alpha.0
@iarna/toml ^3.0.0
aws-cdk-lib ^2.64.0
constructs ^10.1.148
rust.aws-cdk-lambda ^1.1.3
source-map-support ^0.5.21

.github/workflows/release.yml actions

MarcoIeni/release-plz-action main composite
actions/checkout v3 composite

.github/workflows/tests.yml actions

actions-rs/cargo v1 composite
actions-rs/toolchain v1 composite
actions/cache v3 composite
actions/checkout v3 composite

deploy/Dockerfile docker

gcr.io/distroless/cc-debian11 latest build
rust 1.61.0 build

.github/workflows/benchmarking.yml actions

actions-rs/toolchain v1 composite
actions/cache v3 composite
actions/checkout v3 composite
baptiste0928/cargo-install v1 composite
brainstorm/github-action-benchmark cargo-criterion-v3 composite

htsget-actix/Cargo.toml cargo

async-trait 0.1 development
criterion 0.4 development
reqwest 0.11 development
tempfile 3.3 development
actix-cors 0.6
actix-web 4.3
futures 0.3
futures-util 0.3
htsget-config 0.1.1
htsget-http 0.1.1
htsget-search 0.1.1
serde 1.0
serde_json 1.0
tokio 1.25
tracing 0.1
tracing-actix-web 0.7

htsget-config/Cargo.toml cargo

figment 0.10 development
clap 4.1
figment 0.10
http 0.2
http-serde 1.1
noodles 0.32
regex 1.7
serde 1.0
serde_regex 1.1
serde_with 2.2
toml 0.7
tracing 0.1
tracing-subscriber 0.3

htsget-http/Cargo.toml cargo

futures 0.3
htsget-config 0.1.1
htsget-search 0.1.1
http 0.2
serde 1.0
thiserror 1.0
tokio 1.25
tracing 0.1

htsget-lambda/Cargo.toml cargo

async-trait 0.1 development
query_map 0.6 development
tempfile 3.3 development
bytes 1.4
htsget-config 0.1.1
htsget-http 0.1.1
htsget-search 0.1.1
lambda_http 0.7
lambda_runtime 0.7
mime 0.3
regex 1.7
serde 1.0
serde_json 1.0
tokio 1.25
tower-http 0.3
tracing 0.1
tracing-subscriber 0.3

htsget-search/Cargo.toml cargo

aws-credential-types 0.54 development
criterion 0.4 development
data-url 0.2 development
reqwest 0.11 development
s3s 0.3 development
s3s-aws 0.3 development
s3s-fs 0.3 development
tempfile 3.3 development
async-trait 0.1
aws-config 0.54
aws-sdk-s3 0.24
axum 0.6
axum-extra 0.4
base64 0.21
bytes 1.4
futures 0.3
futures-util 0.3
htsget-config 0.1.1
http 0.2
hyper 0.14
noodles 0.32
rustls-pemfile 1.0
serde 1.0
thiserror 1.0
tokio 1.25
tokio-rustls 0.23
tokio-util 0.7
tower 0.4
tower-http 0.3
tracing 0.1

Cargo.lock cargo

383 dependencies

deploy/package-lock.json npm

@types/node 18.13.0 development
aws-cdk 2.64.0 development
fsevents 2.3.2 development
prettier 2.8.3 development
typescript 4.9.5 development
@aws-cdk/asset-awscli-v1 2.2.63
@aws-cdk/asset-kubectl-v20 2.1.1
@aws-cdk/asset-node-proxy-agent-v5 2.0.52
@aws-cdk/aws-apigatewayv2-alpha 2.59.0-alpha.0
@aws-cdk/aws-apigatewayv2-authorizers-alpha 2.59.0-alpha.0
@aws-cdk/aws-apigatewayv2-integrations-alpha 2.59.0-alpha.0
@balena/dockerignore 1.0.2
@iarna/toml 3.0.0
@nodelib/fs.scandir 2.1.5
@nodelib/fs.stat 2.0.5
@nodelib/fs.walk 1.2.8
@types/fs-extra 9.0.13
@types/minimist 1.2.2
@types/node 17.0.45
@types/ps-tree 1.1.2
@types/which 2.0.1
@ziglang/cli 0.0.11
at-least-node 1.0.0
aws-cdk-lib 2.64.0
balanced-match 1.0.2
brace-expansion 1.1.11
braces 3.0.2
buffer-from 1.1.2
case 1.6.3
chalk 5.2.0
concat-map 0.0.1
constructs 10.1.246
data-uri-to-buffer 4.0.1
dir-glob 3.0.1
duplexer 0.1.2
event-stream 3.3.4
fast-glob 3.2.12
fastq 1.15.0
fetch-blob 3.2.0
fill-range 7.0.1
formdata-polyfill 4.0.10
from 0.1.7
fs-extra 10.1.0
fs-extra 9.1.0
glob-parent 5.1.2
globby 13.1.3
graceful-fs 4.2.10
ignore 5.2.4
is-extglob 2.1.1
is-glob 4.0.3
is-number 7.0.0
isexe 2.0.0
jsonfile 6.1.0
jsonschema 1.4.1
lru-cache 6.0.0
map-stream 0.1.0
merge2 1.4.1
micromatch 4.0.5
minimatch 3.1.2
minimist 1.2.8
node-domexception 1.0.0
node-fetch 3.3.0
path-type 4.0.0
pause-stream 0.0.11
picomatch 2.3.1
ps-tree 1.2.0
punycode 2.3.0
queue-microtask 1.2.3
reusify 1.0.4
run-parallel 1.2.0
rust.aws-cdk-lambda 1.2.1
semver 7.3.8
slash 4.0.0
source-map 0.6.1
source-map-support 0.5.21
split 0.3.3
stream-combiner 0.0.4
through 2.3.8
to-regex-range 5.0.1
toml 3.0.0
universalify 2.0.0
web-streams-polyfill 3.2.1
which 2.0.2
yallist 4.0.0
yaml 1.10.2
yaml 2.2.1
zx 6.2.5