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GitHub / vitessce / vitessce-python

Python API and Jupyter widget for Vitessce

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vitessce%2Fvitessce-python

Stars: 30
Forks: 6
Open Issues: 91

License: mit
Language: Python
Repo Size: 34.7 MB
Dependencies: 60

Created: almost 4 years ago
Updated: 16 days ago
Last pushed: 17 days ago
Last synced: 16 days ago

Topics: data-visualization, gehlenborglab, hidivelab, ipywidget, jupyter-widget, jupyterlab-extension, kharchenkolab, single-cell, vitessce

Files

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Readme

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Dependencies

setup.py pypi

black >=21.11b1
generate-tiff-offsets >=0.1.7
negspy >=0.2.24
numcodecs >=0.5.7
numpy >=1.21.2
pandas >=1.1.2
scipy >=1.2.1
zarr >=2.5.0

.github/workflows/deploy.yml actions

actions/checkout v3 composite
actions/deploy-pages v1 composite
actions/setup-python v2 composite
actions/upload-pages-artifact v1 composite
pypa/gh-action-pypi-publish v1.4.1 composite

.github/workflows/docs.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite

.github/workflows/lint.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite

.github/workflows/test.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite

.github/workflows/test_demos.yml actions

actions/checkout v2 composite
actions/setup-python v2 composite

pyproject.toml pypi

anndata >=0.7.8,<0.9
black >=21.11b1
jsonschema >=3.2
negspy >=0.2.24
numcodecs >=0.5.7
numpy >=1.21.2
ome-zarr ==0.2.1
pandas >=1.1.2
scanpy >=1.9.3
scipy >=1.2.1
tifffile >=2020.10.1
zarr >=2.5.0

demos/environment.yml conda

environment.yml conda

pip
python 3.9

binder/environment.yml pypi

docs/notebooks/environment.yml pypi

loompy >=3.0.6
scikit-misc >=0.1.3