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GitHub / welch16 / ChIPexoQual
A quality control pipeline for ChIP-exo/nexus samples.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/welch16%2FChIPexoQual
Stars: 1
Forks: 2
Open Issues: 2
License: None
Language: R
Repo Size: 17.9 MB
Dependencies:
26
Created: over 9 years ago
Updated: about 6 years ago
Last pushed: over 4 years ago
Last synced: 5 months ago
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Dependencies
DESCRIPTION
cran
- GenomicAlignments >= 1.0.1 depends
- R >= 3.4.0 depends
- BiocParallel * imports
- GenomeInfoDb * imports
- GenomicRanges >=1.14.4 imports
- IRanges >= 1.6 imports
- RColorBrewer >= 1.1 imports
- Rsamtools >=1.16.1 imports
- S4Vectors >= 0.8 imports
- biovizBase >=1.18 imports
- broom >= 0.4 imports
- data.table >= 1.9.6 imports
- dplyr >= 0.5 imports
- ggplot2 >= 1.0 imports
- hexbin >= 1.27 imports
- methods * imports
- rmarkdown * imports
- scales >= 0.4.0 imports
- stats * imports
- utils * imports
- viridis >= 0.3 imports
- BiocStyle * suggests
- ChIPexoQualExample >= 0.99.1 suggests
- gridExtra >= 2.2 suggests
- knitr >= 1.10 suggests
- testthat * suggests