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GitHub / ynshen / k-seq
Kinetic sequencing using NGS to estimate the kinetic coefficients of ribozymes in high through-put manner
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ynshen%2Fk-seq
Stars: 0
Forks: 0
Open Issues: 6
License: None
Language: Jupyter Notebook
Repo Size: 89 MB
Dependencies:
120
Created: about 5 years ago
Updated: about 3 years ago
Last pushed: over 1 year ago
Last synced: 13 days ago
Files
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Readme
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Dependencies
environment.yml
pypi
- doc-helper ==1.1.1
- python-levenshtein ==0.12.0
- seq-landscape ==0.1.0b1
- yutility ==0.6.3
requirements.txt
pypi
- Jinja2 ==2.11.3
- MarkupSafe ==1.1.1
- PyYAML ==5.4
- Pygments ==2.7.4
- Send2Trash ==1.5.0
- altgraph ==0.10.2
- appnope ==0.1.2
- asn1crypto ==0.24.0
- attrs ==20.3.0
- backports-abc ==0.5
- backports.functools-lru-cache ==1.6.1
- backports.shutil-get-terminal-size ==1.0.0
- bdist-mpkg ==0.5.0
- bleach ==3.3.0
- bonjour-py ==0.3
- cffi ==1.12.2
- configparser ==4.0.2
- contextlib2 ==0.6.0.post1
- cryptography ==3.3.2
- decorator ==4.4.2
- defusedxml ==0.6.0
- entrypoints ==0.3
- enum34 ==1.1.6
- functools32 ==3.2.3.post2
- future ==0.17.1
- futures ==3.3.0
- importlib-metadata ==2.1.1
- ipaddress ==1.0.22
- ipykernel ==4.10.1
- ipython ==5.10.0
- ipython-genutils ==0.2.0
- jsonschema ==3.2.0
- jupyter-client ==5.3.5
- jupyter-contrib-core ==0.3.3
- jupyter-contrib-nbextensions ==0.5.1
- jupyter-core ==4.6.3
- jupyter-highlight-selected-word ==0.2.0
- jupyter-latex-envs ==1.4.6
- jupyter-nbextensions-configurator ==0.4.1
- lxml ==4.6.3
- macholib ==1.5.1
- matplotlib ==1.3.1
- mistune ==0.8.4
- modulegraph ==0.10.4
- nbconvert ==5.6.1
- nbformat ==4.4.0
- nose ==1.3.7
- notebook ==6.1.5
- numpy ==1.16.6
- packaging ==20.8
- pandas ==0.24.2
- pandocfilters ==1.4.3
- pathlib2 ==2.3.5
- patsy ==0.5.1
- pexpect ==4.8.0
- pickleshare ==0.7.5
- prometheus-client ==0.9.0
- prompt-toolkit ==1.0.18
- ptyprocess ==0.7.0
- py2app ==0.7.3
- pyOpenSSL ==19.0.0
- pycparser ==2.19
- pyobjc-core ==2.5.1
- pyobjc-framework-Accounts ==2.5.1
- pyobjc-framework-AddressBook ==2.5.1
- pyobjc-framework-AppleScriptKit ==2.5.1
- pyobjc-framework-AppleScriptObjC ==2.5.1
- pyobjc-framework-Automator ==2.5.1
- pyobjc-framework-CFNetwork ==2.5.1
- pyobjc-framework-Cocoa ==2.5.1
- pyobjc-framework-Collaboration ==2.5.1
- pyobjc-framework-CoreData ==2.5.1
- pyobjc-framework-CoreLocation ==2.5.1
- pyobjc-framework-CoreText ==2.5.1
- pyobjc-framework-DictionaryServices ==2.5.1
- pyobjc-framework-EventKit ==2.5.1
- pyobjc-framework-ExceptionHandling ==2.5.1
- pyobjc-framework-FSEvents ==2.5.1
- pyobjc-framework-InputMethodKit ==2.5.1
- pyobjc-framework-InstallerPlugins ==2.5.1
- pyobjc-framework-InstantMessage ==2.5.1
- pyobjc-framework-LatentSemanticMapping ==2.5.1
- pyobjc-framework-LaunchServices ==2.5.1
- pyobjc-framework-Message ==2.5.1
- pyobjc-framework-OpenDirectory ==2.5.1
- pyobjc-framework-PreferencePanes ==2.5.1
- pyobjc-framework-PubSub ==2.5.1
- pyobjc-framework-QTKit ==2.5.1
- pyobjc-framework-Quartz ==2.5.1
- pyobjc-framework-ScreenSaver ==2.5.1
- pyobjc-framework-ScriptingBridge ==2.5.1
- pyobjc-framework-SearchKit ==2.5.1
- pyobjc-framework-ServiceManagement ==2.5.1
- pyobjc-framework-Social ==2.5.1
- pyobjc-framework-SyncServices ==2.5.1
- pyobjc-framework-SystemConfiguration ==2.5.1
- pyobjc-framework-WebKit ==2.5.1
- pyparsing ==2.4.7
- pyrsistent ==0.16.1
- python-dateutil ==2.8.1
- pytz ==2013.7
- pyzmq ==19.0.2
- scandir ==1.10.0
- scipy ==1.2.3
- simplegeneric ==0.8.1
- singledispatch ==3.4.0.3
- six ==1.12.0
- statsmodels ==0.11.0
- terminado ==0.8.3
- testpath ==0.4.4
- tornado ==5.1.1
- traitlets ==4.3.3
- wcwidth ==0.2.5
- webencodings ==0.5.1
- xattr ==0.6.4
- zipp ==1.2.0