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GitHub / yo-aka-gene / algebra_ver822
Analysis codes for "A set-theoretic definition of cell types with an algebraic structure on gene regulatory networks and application in annotation of RNA-seq data"
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yo-aka-gene%2Falgebra_ver822
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: Jupyter Notebook
Repo Size: 54.2 MB
Dependencies:
198
Created: almost 2 years ago
Updated: over 1 year ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Files
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Dependencies
Dockerfile
docker
- jupyter/datascience-notebook lab-3.4.5 build
docker-compose.yml
docker
- Babel ==2.10.3
- Bottleneck ==1.3.5
- Cython ==0.29.32
- HeapDict ==1.0.1
- Jinja2 ==3.1.2
- Mako ==1.2.1
- MarkupSafe ==2.1.1
- Pillow ==9.2.0
- PyJWT ==2.4.0
- PySocks ==1.7.1
- PyWavelets ==1.3.0
- PyYAML ==6.0
- Pygments ==2.13.0
- SQLAlchemy ==1.4.40
- Send2Trash ==1.8.0
- alembic ==1.8.1
- altair ==4.2.0
- anyio ==3.6.1
- argon2-cffi ==21.3.0
- argon2-cffi-bindings ==21.2.0
- asttokens ==2.0.8
- async-generator ==1.10
- attrs ==22.1.0
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- backcall ==0.2.0
- backports.functools-lru-cache ==1.6.4
- beautifulsoup4 ==4.11.1
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- cached-property ==1.5.2
- certifi ==2022.6.15
- certipy ==0.1.3
- cffi ==1.15.1
- charset-normalizer ==2.1.0
- click ==8.1.3
- cliff ==4.0.0
- cloudpickle ==2.1.0
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- cmd2 ==2.4.2
- colorama ==0.4.5
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- cryptography ==37.0.4
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- dask ==2022.8.1
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- decorator ==5.1.1
- defusedxml ==0.7.1
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- distributed ==2022.8.1
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- statsmodels ==0.13.2
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- tables ==3.7.0
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- torch ==1.12.1
- tornado ==6.1
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- traitlets ==5.3.0
- typing_extensions ==4.3.0
- tzdata ==2022.2
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- umap-learn ==0.5.3
- unicodedata2 ==14.0.0
- urllib3 ==1.26.11
- wcwidth ==0.2.5
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- wheel ==0.37.1
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- zipp ==3.8.1