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GitHub / yuabrahamliu / scDeconv
scDeconv is an R Package to Deconvolve Bulk DNA Methylation Data with scRNA-seq Data in a Multi-omics Manner.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/yuabrahamliu%2FscDeconv
Stars: 4
Forks: 3
Open Issues: 0
License: None
Language: R
Repo Size: 116 MB
Dependencies:
25
Created: over 2 years ago
Updated: 9 months ago
Last pushed: 2 months ago
Last synced: 2 months ago
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Dependencies
DESCRIPTION
cran
- R >= 2.10 depends
- AnnotationDbi >= 1.52.0 imports
- IlluminaHumanMethylation450kanno.ilmn12.hg19 >= 0.6.0 imports
- IlluminaHumanMethylationEPICanno.ilm10b4.hg19 >= 0.6.0 imports
- Seurat >= 4.0.1 imports
- doParallel >= 1.0.16 imports
- enrichR >= 3.0 imports
- foreach >= 1.5.1 imports
- ggplot2 >= 3.3.3 imports
- glmnet >= 4.1.1 imports
- limma >= 3.46.0 imports
- org.Hs.eg.db >= 3.12.0 imports
- parallel >= 4.0.5 imports
- pheatmap >= 1.0.12 imports
- plyr >= 1.8.6 imports
- scales >= 1.1.1 imports
- scater >= 1.18.6 imports
- sva >= 3.38.0 imports
- GenomicFeatures >= 1.42.3 suggests
- GenomicRanges >= 1.42.0 suggests
- IlluminaHumanMethylation27kanno.ilmn12.hg19 >= 0.6.0 suggests
- TxDb.Hsapiens.UCSC.hg19.knownGene >= 3.2.2 suggests
- TxDb.Hsapiens.UCSC.hg38.knownGene >= 3.10.0 suggests
- TxDb.Mmusculus.UCSC.mm10.knownGene >= 3.10.0 suggests
- org.Mm.eg.db >= 3.12.0 suggests