Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: genotypes
btmartin721/SNPio
API to read, write, and filter DNA sequence alignment files
Language: Python - Size: 108 MB - Last synced: 6 days ago - Pushed: 10 days ago - Stars: 2 - Forks: 1
germinateplatform/germinate-vue
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
Language: Vue - Size: 7.63 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 12 - Forks: 4
arvkevi/ezancestry
Easy genetic ancestry predictions in Python
Language: Jupyter Notebook - Size: 25 MB - Last synced: 18 days ago - Pushed: 18 days ago - Stars: 56 - Forks: 11
lpembleton/gatk4-when-did-dot-leave
Confirmation of which GATK4 versions go against VCF specifications and call missing GT as 0/0 instead of ./.
Size: 76.2 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0
paulstothard/genotype_conversion_file_builder
A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
Language: Perl - Size: 128 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0
k-yumin/punnett-square
making punnett square on excel and calculating the phenotypic ratio.
Language: Jupyter Notebook - Size: 21.5 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 1 - Forks: 0
germinateplatform/germinate-gatekeeper 📦
Germinate Gatekeeper
Language: Java - Size: 72.3 MB - Last synced: 4 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 1
germinateplatform/germinate 📦
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized using common, reusable programming components.
Language: Java - Size: 197 MB - Last synced: 4 months ago - Pushed: almost 3 years ago - Stars: 4 - Forks: 1
inzilico/imputeqc
An R package to estimate the quality of imputation of genotypes.
Language: R - Size: 584 KB - Last synced: 7 months ago - Pushed: almost 4 years ago - Stars: 6 - Forks: 3
YujiYashima/ABO-System
An application that handles and manipulates functions and variables related to the type of blood system: ABO System.
Language: Jupyter Notebook - Size: 8.79 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
ekaminuma/GTASSIST
GTASSIST: Objective evaluation measures of genetic marker selection in SNP genotyping (2008-02-05)
Language: Matlab - Size: 97.8 MB - Last synced: 7 months ago - Pushed: over 8 years ago - Stars: 0 - Forks: 0
adiamb/AB-Genotypes-to-ATGC-Illumina
Python script to convert AB genotypes to ATGC for illumina arrays
Language: Python - Size: 7.81 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0
DrTrevorBell/CCT
Hepatitis B virus Co-ordinate Conversion Tool
Language: HTML - Size: 15.6 KB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0
