GitHub topics: genotypes
SNP2Pheno/SNP2Pheno
Study Project MBI 2025
Size: 0 Bytes - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
SolenePety/RITHMS
A framework for simulating transgenerational hologenomic data
Language: R - Size: 13 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 4 - Forks: 0
btmartin721/SNPio
API to read, write, and filter DNA sequence alignment files
Language: Python - Size: 166 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 2 - Forks: 1
germinateplatform/germinate-vue
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
Language: Vue - Size: 10.6 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 16 - Forks: 4
arvkevi/ezancestry
Easy genetic ancestry predictions in Python
Language: Jupyter Notebook - Size: 24.9 MB - Last synced at: 28 days ago - Pushed at: about 2 months ago - Stars: 65 - Forks: 11
ChrAtt1/Sequencing_Data_Analysis_Framework
Data analysis framework to automatically process, compare and analyze both 2nd generation and 3rd generation sequencing data from Illumina and ONT platforms.
Language: Python - Size: 177 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
paulstothard/genotype_conversion_file_builder
A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
Language: Perl - Size: 127 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
VQCarneiro/BioFuzzy
BioFuzzy Software: Fuzzy Logic Applied in Plant Breeding
Language: Matlab - Size: 1.16 MB - Last synced at: about 1 month ago - Pushed at: almost 7 years ago - Stars: 1 - Forks: 0
lpembleton/gatk4-when-did-dot-leave
Confirmation of which GATK4 versions go against VCF specifications and call missing GT as 0/0 instead of ./.
Size: 76.2 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
k-yumin/punnett-square
making punnett square on excel and calculating the phenotypic ratio.
Language: Jupyter Notebook - Size: 21.5 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
germinateplatform/germinate-gatekeeper 📦
Germinate Gatekeeper
Language: Java - Size: 72.3 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
germinateplatform/germinate 📦
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized using common, reusable programming components.
Language: Java - Size: 197 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 1
inzilico/imputeqc
An R package to estimate the quality of imputation of genotypes.
Language: R - Size: 584 KB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 3
YujiYashima/ABO-System
An application that handles and manipulates functions and variables related to the type of blood system: ABO System.
Language: Jupyter Notebook - Size: 8.79 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
ekaminuma/GTASSIST
GTASSIST: Objective evaluation measures of genetic marker selection in SNP genotyping (2008-02-05)
Language: Matlab - Size: 97.8 MB - Last synced at: over 1 year ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0
adiamb/AB-Genotypes-to-ATGC-Illumina
Python script to convert AB genotypes to ATGC for illumina arrays
Language: Python - Size: 7.81 KB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 1 - Forks: 0
DrTrevorBell/CCT
Hepatitis B virus Co-ordinate Conversion Tool
Language: HTML - Size: 15.6 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
