Topic: "bioc"
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
Language: R - Size: 349 MB - Last synced at: 6 days ago - Pushed at: about 1 month ago - Stars: 327 - Forks: 118
bionlplab/bioc
Data structures and code to read/write BioC XML and Json.
Language: Python - Size: 442 KB - Last synced at: 14 days ago - Pushed at: almost 2 years ago - Stars: 33 - Forks: 11
omicsNLP/Auto-CORPus
Auto-CORPus pipeline developed by a University of Nottingham and Imperial College London collaboration to standardize text and table data extracted from full text publications. See Open Access publication at: https://doi.org/10.3389/fdgth.2022.788124.
Language: HTML - Size: 57.4 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 21 - Forks: 9
k4nfr3/XDR_scripts
A few XDR Scripts
Language: Python - Size: 1.03 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 17 - Forks: 3
jakelever/biotext
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
Language: Python - Size: 382 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 5
sgibb/cleaver
Cleavage of polypeptide sequences
Language: R - Size: 354 KB - Last synced at: 28 days ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 3
grimbough/code.bioconductor.org
Tools for browsing the Bioconductor code repository
Language: CSS - Size: 2.04 MB - Last synced at: 6 days ago - Pushed at: 11 days ago - Stars: 4 - Forks: 0
acinostroza/TargetSearch
R package for the analysis of GC-MS metabolite profiling data. This git repository mirrors the TargetSearch git repository on bioconductor.
Language: R - Size: 1.04 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 4 - Forks: 0
equipe22/pymedext_core
core of pymedext source
Language: Python - Size: 12.3 MB - Last synced at: about 1 month ago - Pushed at: about 4 years ago - Stars: 2 - Forks: 0
KashifMoin1410/HNM-Based-Biomedical-Relation-Extraction
Implements relation extraction for biomedical texts using Hard Negative Mining to improve accuracy in identifying complex entity relationships. Includes code for data processing, training, and evaluation with BioC-format datasets.
Language: Jupyter Notebook - Size: 1.82 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 1 - Forks: 0
acinostroza/TargetSearchData
Example GC-MS data for TargetSearch Package
Language: TeX - Size: 29.1 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 1
ROCKY2901/HNM-Based-Biomedical-Relation-Extraction
This repository offers a robust implementation of biomedical relation extraction models, featuring Hard Negative Mining to boost performance. Explore baseline and HNM-enhanced models with complete code, pretrained models, and sample data for your experiments. 🦠📦
Language: Jupyter Notebook - Size: 1.61 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
BMKEG/sciDT-pipeline
UimaBioC-based pipelines to drive sciDT analysis.
Language: Java - Size: 128 KB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 1
