Topic: "bioinformatics-tool"
tseemann/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Language: Perl - Size: 15.5 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 401 - Forks: 95
lightdock/lightdock
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Language: Python - Size: 93.3 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 332 - Forks: 46
inab/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Language: C++ - Size: 56.2 MB - Last synced at: about 18 hours ago - Pushed at: about 19 hours ago - Stars: 203 - Forks: 47
sunduanchen/Scissor
Scissor package
Language: C++ - Size: 28.5 MB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 191 - Forks: 33
GuyTeichman/RNAlysis
Analyze your RNA sequencing data without writing a single line of code
Language: Python - Size: 795 MB - Last synced at: 5 days ago - Pushed at: 3 months ago - Stars: 133 - Forks: 13
JianYang-Lab/gsMap
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
Language: Python - Size: 24.7 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 129 - Forks: 13
KarchinLab/open-cravat
A modular annotation tool for genomic variants
Language: JavaScript - Size: 9.24 MB - Last synced at: 8 days ago - Pushed at: 8 days ago - Stars: 120 - Forks: 33
avrabyt/YouTube-Tutorials
📹 Collection of my Youtube Tutorials over the years! Read, write, and share what you create ✨🎈
Language: Python - Size: 696 KB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 117 - Forks: 48
telatin/seqfu2
:rocket: seqfu - Sequece Fastx Utilities
Language: Nim - Size: 78.2 MB - Last synced at: 9 days ago - Pushed at: 4 months ago - Stars: 114 - Forks: 9
bcgsc/RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
Language: Java - Size: 2.41 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 103 - Forks: 8
imgag/ClinCNV
Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
Language: R - Size: 49 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 82 - Forks: 4
Superzchen/iLearnPlus
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Language: Python - Size: 31.7 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 81 - Forks: 31
PabloEnmanuelRamos/BioBlender21
Blender plugin to process biological data and molecular work.
Language: Python - Size: 171 MB - Last synced at: about 1 year ago - Pushed at: about 3 years ago - Stars: 79 - Forks: 11
chriscainx/mnnpy
An implementation of MNN (Mutual Nearest Neighbors) correct in python.
Language: Python - Size: 1.05 MB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 73 - Forks: 32
josiahseaman/FluentDNA
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioinformatics projects.
Language: JavaScript - Size: 71.1 MB - Last synced at: 4 months ago - Pushed at: almost 4 years ago - Stars: 65 - Forks: 7
ShujiaHuang/geneview
Genomics data visualization in Python by using matplotlib.
Language: Python - Size: 10.8 MB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 64 - Forks: 8
JetBrains-Research/snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
Language: Python - Size: 3.91 MB - Last synced at: 26 days ago - Pushed at: 26 days ago - Stars: 62 - Forks: 7
rcedgar/reseek
Protein structure alignment and search algorithm
Language: C++ - Size: 24.1 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 59 - Forks: 3
muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Language: C++ - Size: 149 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 59 - Forks: 13
bcgsc/tigmint
⛓ Correct misassemblies using linked AND long reads
Language: Python - Size: 20.9 MB - Last synced at: 29 days ago - Pushed at: over 1 year ago - Stars: 59 - Forks: 13
ncsa/NEAT
NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
Language: Python - Size: 109 MB - Last synced at: 2 days ago - Pushed at: about 1 month ago - Stars: 53 - Forks: 16
JamieHeather/stitchr
Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
Language: Python - Size: 30.9 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 51 - Forks: 10
bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
Language: HTML - Size: 6.8 MB - Last synced at: 25 days ago - Pushed at: over 1 year ago - Stars: 51 - Forks: 15
s4hts/HTStream
A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes
Language: C++ - Size: 20.3 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 49 - Forks: 9
ebi-jdispatcher/webservice-clients
A collection of Web Service Clients to consume EBI's Job Dispatcher tools via REST APIs
Language: Perl - Size: 247 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 49 - Forks: 23
clemgoub/TE-Aid
Annotation helper tool for the manual curation of transposable element consensus sequences
Language: R - Size: 2.13 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 47 - Forks: 7
YaqiangCao/cLoops2
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
Language: Python - Size: 251 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 46 - Forks: 8
treangenlab/methphaser
MethPhaser: methylation-based haplotype phasing of human genomes
Language: Python - Size: 197 KB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 45 - Forks: 1
telatin/covtobed
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Language: C++ - Size: 56 MB - Last synced at: 11 days ago - Pushed at: about 3 years ago - Stars: 44 - Forks: 3
bcgsc/goldrush
Linear-time de novo Long Read Assembler
Language: C++ - Size: 4.26 MB - Last synced at: 28 days ago - Pushed at: 4 months ago - Stars: 40 - Forks: 2
Kukuster/SumStatsRehab
GWAS summary statistics files QC tool
Language: Python - Size: 1.87 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 38 - Forks: 6
labstructbioinf/localpdb
Python package to manage protein structures and their annotations
Language: Python - Size: 1.72 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 38 - Forks: 4
onclave/NSGA-II
an implementation of NSGA-II in java
Language: Java - Size: 327 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 38 - Forks: 21
biologger/speciesprimer
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
Language: Python - Size: 5.17 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 34 - Forks: 18
genotoul-bioinfo/Binette
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
Language: Python - Size: 577 KB - Last synced at: 11 days ago - Pushed at: 16 days ago - Stars: 33 - Forks: 0
Superzchen/iFeatureOmega-CLI
iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versions (i.e. iFeatureOmega-Web, iFeatureOmega-GUI and iFeatureOmega-CLI) of iFeatureOmega have been made available to cater to both experienced bioinformaticians and biologists with limited programming expertise. iFeatureOmega also expands its functionality by integrating 15 feature analysis algorithms (including ten cluster algorithms, three dimensionality reduction algorithms and two feature normalization algorithms) and providing nine types of interactive plots for statistical features visualization (including histogram, kernel density plot, heatmap, boxplot, line chart, scatter plot, circular plot, protein three dimensional structure plot and ligand structure plot). iFeatureOmega is an open-source platform for academic purposes. The web server can be accessed through http://ifeature2.erc.monash.edu and the GUI and CLI versions can be download at: https://github.com/Superzchen/iFeatureOmega-GUI and https://github.com/Superzchen/iFeatureOmega-CLI, respectively.
Language: Python - Size: 8.58 MB - Last synced at: 24 days ago - Pushed at: over 1 year ago - Stars: 32 - Forks: 10
suchapalaver/krust
Bioinformatics 101 tool for counting unique k-length substrings in DNA
Language: Rust - Size: 23.1 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 30 - Forks: 5
Superzchen/iFeatureOmega-GUI
iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequences, 3D structures and ligands. To the best of our knowledge, iFeatureOmega supplies the largest number of feature extraction and analysis approaches for most molecule types compared to other pipelines. Three versions (i.e. iFeatureOmega-Web, iFeatureOmega-GUI and iFeatureOmega-CLI) of iFeatureOmega have been made available to cater to both experienced bioinformaticians and biologists with limited programming expertise. iFeatureOmega also expands its functionality by integrating 15 feature analysis algorithms (including ten cluster algorithms, three dimensionality reduction algorithms and two feature normalization algorithms) and providing nine types of interactive plots for statistical features visualization (including histogram, kernel density plot, heatmap, boxplot, line chart, scatter plot, circular plot, protein three dimensional structure plot and ligand structure plot). iFeatureOmega is an open-source platform for academic purposes. The web server can be accessed through http://ifeature2.erc.monash.edu and the GUI and CLI versions can be download at: https://github.com/Superzchen/iFeatureOmega-GUI and https://github.com/Superzchen/iFeatureOmega-CLI, respectively.
Language: Python - Size: 23.6 MB - Last synced at: 2 months ago - Pushed at: almost 3 years ago - Stars: 29 - Forks: 6
n-szulc/fingeRNAt
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
Language: Python - Size: 14.4 MB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 28 - Forks: 7
aljpetri/isONform
De novo construction of isoforms from long-read data
Language: Python - Size: 771 KB - Last synced at: 8 days ago - Pushed at: 6 months ago - Stars: 26 - Forks: 3
desmid/mview
MView extracts and reformats the results of a sequence database search or multiple alignment.
Language: Perl - Size: 2.86 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 26 - Forks: 11
dermasugita/Viola-SV
Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.
Language: Python - Size: 47.2 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 26 - Forks: 4
akcorut/kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Language: Python - Size: 610 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 5
mickaelleclercq/BioDiscML
Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
Language: Java - Size: 413 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 12
ncbi/tree-tool
Incremental building of phylogenetic distance trees
Language: HTML - Size: 75.1 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 23 - Forks: 9
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
Language: Python - Size: 17.1 MB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 23 - Forks: 4
epifluidlab/FinaleToolkit
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
Language: Python - Size: 82.9 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 22 - Forks: 7
SouradiptoC/CodonU
A python project for analysis of codon usage for gene or genome analysis
Language: Python - Size: 64.4 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 21 - Forks: 1
cliffren/PENCIL
PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
Language: Python - Size: 10.3 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 20 - Forks: 3
hernanmd/BioSmalltalk
Bioinformatics Library for Pharo
Language: Smalltalk - Size: 88.2 MB - Last synced at: 3 days ago - Pushed at: over 1 year ago - Stars: 20 - Forks: 3
labstructbioinf/DeepCoil
Fast and accurate prediction of coiled coil domains in protein sequences.
Language: Python - Size: 154 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 19 - Forks: 1
bcgsc/physlr
:chains: Construct a Physical Map from Linked Reads
Language: Python - Size: 2.17 MB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 18 - Forks: 8
GuoBioinfoLab/CATT
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
Language: Julia - Size: 178 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 18 - Forks: 4
Gardner-BinfLab/TISIGNER-ReactJS
TISIGNER: Unleash the power of synthetic biology
Language: JavaScript - Size: 160 MB - Last synced at: 10 months ago - Pushed at: about 2 years ago - Stars: 18 - Forks: 7
slowikj/seqR
fast and comprehensive k-mer counting package
Language: C++ - Size: 1.72 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 18 - Forks: 1
agmcfarland/GeneGrouper
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
Language: Python - Size: 61.5 MB - Last synced at: 10 days ago - Pushed at: 6 months ago - Stars: 17 - Forks: 5
chgibb/PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Language: TypeScript - Size: 649 MB - Last synced at: 9 days ago - Pushed at: over 2 years ago - Stars: 17 - Forks: 2
mhtjsh/Bioinformatics_Algorithms
I am sharing my code repository to understand the working and principle of working of various BioInformatics code in Python
Language: Python - Size: 76.2 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 16 - Forks: 2
urgi-anagen/TE_finder
A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
Language: C++ - Size: 91.4 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 16 - Forks: 2
OndrejSladky/kmercamel
KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.
Language: C++ - Size: 8.06 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 15 - Forks: 2
pritykinlab/guidescan-cli
a guideRNA database generation tool
Language: C++ - Size: 9.57 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 15 - Forks: 5
xinglab-ai/genomap
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
Language: Python - Size: 43.7 MB - Last synced at: 2 months ago - Pushed at: 12 months ago - Stars: 15 - Forks: 3
mikeroyal/Bioinformatics-Guide
Bioinformatics Guide
Size: 160 KB - Last synced at: about 14 hours ago - Pushed at: almost 4 years ago - Stars: 15 - Forks: 4
ncbi/stxtyper
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Language: C++ - Size: 979 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 14 - Forks: 6
febos/SQUARNA
RNA secondary structure prediction tool
Language: Jupyter Notebook - Size: 162 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 14 - Forks: 2
daisybio/NEASE
A network-based approach for exon set enrichment
Language: Python - Size: 49.3 MB - Last synced at: 10 days ago - Pushed at: about 2 months ago - Stars: 14 - Forks: 2
PDBeurope/protein-cluster-conformers
Clusters protein chains based on CA distance difference
Language: Python - Size: 105 MB - Last synced at: 1 day ago - Pushed at: 3 months ago - Stars: 14 - Forks: 0
raymondkiu/bioinformatics-tools
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
Language: Shell - Size: 78.1 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 14 - Forks: 5
johnnytam100/awesome-protein-design
A curated list of awesome protein design research, software and resources.
Size: 29.3 KB - Last synced at: 3 days ago - Pushed at: about 3 years ago - Stars: 14 - Forks: 1
DEIB-GECO/PyGMQL
Python Library for data analysis based on GMQL
Language: Python - Size: 43.4 MB - Last synced at: 3 days ago - Pushed at: over 3 years ago - Stars: 14 - Forks: 5
xunchen85/VIcaller
A software to detect virome-wide integrations
Language: Perl - Size: 14.5 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 14 - Forks: 5
delosh653/ECHO
An application to find and visualize circadian rhythms in time course data using extended harmonic oscillators.
Language: R - Size: 6.86 MB - Last synced at: about 14 hours ago - Pushed at: almost 5 years ago - Stars: 14 - Forks: 0
vidboda/MobiDetails
WebApp for DNA variants interpretation
Language: Python - Size: 13.7 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 13 - Forks: 6
anuradhawick/seq2vec
Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!
Language: C++ - Size: 7.26 MB - Last synced at: 7 days ago - Pushed at: about 1 year ago - Stars: 13 - Forks: 0
Picani/fastax
Make phylogenetic trees and lineages from the NCBI Taxonomy database
Language: Rust - Size: 71.3 KB - Last synced at: 15 days ago - Pushed at: about 2 years ago - Stars: 13 - Forks: 0
artyomovlab/hmmhc
MHC class II binding prediction
Language: Python - Size: 38.1 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 13 - Forks: 2
fryzjergda/DesiRNA
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
Language: Python - Size: 15.2 MB - Last synced at: about 1 month ago - Pushed at: 10 months ago - Stars: 12 - Forks: 1
ebi-jdispatcher/webservice-cwl
Programmatic access to various data resources and analysis EBI tools via CWL
Language: Common Workflow Language - Size: 958 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 12 - Forks: 3
huangzhii/biolearns
BioLearns: Computational Biology and Bioinformatics Toolbox in Python
Language: Python - Size: 2.94 MB - Last synced at: 22 days ago - Pushed at: over 2 years ago - Stars: 12 - Forks: 0
NCBI-Hackathons/HLAClustRView
R package specialized in HLA typing clustering and visualization based on specific similarity metrics
Language: R - Size: 823 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 12 - Forks: 10
BioinformaticsToolsmith/MeShClust2
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
Language: C++ - Size: 184 KB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 11 - Forks: 0
daisybio/DIGGER
Exploring Isoform-specific interactions
Language: Python - Size: 55.4 MB - Last synced at: 3 days ago - Pushed at: 5 days ago - Stars: 10 - Forks: 3
mt1022/gppy
[G]enomic [P]ositioning with [Py]thon
Language: Python - Size: 2.99 MB - Last synced at: 20 days ago - Pushed at: 6 months ago - Stars: 10 - Forks: 2
nalomran/PyReQTL
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
Language: Python - Size: 3.1 MB - Last synced at: 7 months ago - Pushed at: over 3 years ago - Stars: 10 - Forks: 0
MrAlexSee/sopang
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
Language: C++ - Size: 733 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 10 - Forks: 2
visanuwan/cresil
CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences
Language: Python - Size: 1.01 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 9 - Forks: 3
REMI-HIRI/POTATO
Practical Optical Tweezers Analysis TOol
Language: Python - Size: 4 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 9 - Forks: 0
BioGavin/wlabkit
🧬 This is a toolkit to handle bio-data from WeiBin Lab
Language: Python - Size: 67.9 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 1
chan-labsite/PCNAdeep
Track single cells and profile the cell cycle with PCNA fluorescence images
Language: Python - Size: 19 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 2
Vivianstats/MAAPER
Model-based analysis of APA using 3' end-linked reads
Language: R - Size: 192 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 9 - Forks: 4
i2bc/ORFmine
ORFmine is an open-source tool for identifying and analyzing all Open Reading Frames (ORFs) in genomic data, focusing on their sequences, structures, evolution and translation activities.
Language: Python - Size: 270 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 8 - Forks: 1
ntanmayee/decoden
🌊 Analyse experimental conditions and replicates jointly to remove cell-type specific bias in multi-condition ChIP-Seq
Language: Python - Size: 206 MB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 8 - Forks: 1
yutanagano/tidytcells
Standardise TR/MH data
Language: Python - Size: 40.3 MB - Last synced at: 16 days ago - Pushed at: 3 months ago - Stars: 8 - Forks: 2
RenneLab/hybkit
Toolkit for analysis of ".hyb" format nucleotide sequence data from chimeric RNA experiments.
Language: Python - Size: 344 MB - Last synced at: 21 days ago - Pushed at: 9 months ago - Stars: 8 - Forks: 1
johnnytam100/pdb2uniprot
A Python script to map PDB ID + chain ID to UniProt ID.
Language: Python - Size: 15.6 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 0
rribeiro-sci/pygomodo
GPCRs modeling and docking with python
Language: Python - Size: 486 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 8 - Forks: 1
ylaboratory/ETNA
Embeddings to Network Alignment - align biological networks between two species
Language: Python - Size: 1.69 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 4
ScialdoneLab/CIARA_python
Implementation of entropy of mixing algorithm in python
Language: Jupyter Notebook - Size: 327 KB - Last synced at: about 1 month ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 1
ChenfuShi/HiChIP_peaks
A tool to analyse HiChIP data
Language: HTML - Size: 95.8 MB - Last synced at: 6 days ago - Pushed at: over 4 years ago - Stars: 8 - Forks: 4
ramsainanduri/split_multi_fasta
Split multi fasta file into single fasta files
Language: Python - Size: 15.6 KB - Last synced at: over 1 year ago - Pushed at: about 5 years ago - Stars: 8 - Forks: 8
