Topic: "diffusion-preprocessing"
muscbridge/PyDesigner
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
Language: Python - Size: 47.8 MB - Last synced at: 29 days ago - Pushed at: about 1 month ago - Stars: 28 - Forks: 7
brainlife/app-dtiinit
Runs vistasoft/dtiInit to preprocess and register dwi to anat/t1
Language: Matlab - Size: 164 MB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 2
brainlife/app-epi-t1-registration
Align a Diffusion weighted MRI image to a T1 image using FSL's epi_reg. INPUTS: DWI data and a T1 image. OUTPUTS aligned DWI filed
Language: Shell - Size: 28.8 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
dipy/bl_apps_dipy_denoise_lpca
Brainlife wrapper app for dipy_denoise_lpca workflows.
Language: Shell - Size: 14.6 KB - Last synced at: over 2 years ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 1
dipy/bl_apps_dipy_median_otsu
Brainlife wrapper app for dipy_median_otsu workflows.
Language: Shell - Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
dipy/bl_apps_dipy_reslice
Brainlife wrapper app for dipy_reslice workflows.
Language: Shell - Size: 7.81 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
dipy/bl_apps_dipy_gibbs_ringing
Brainlife wrapper app for dipy_gibbs_ringing workflows.
Language: Shell - Size: 8.79 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
brainlife/app-splitshells Fork of kitchell/app-splitshells
Split multi-shell diffusion data into a single chosen b value shell while rounding bvals
Language: Shell - Size: 584 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
dipy/bl_apps_dipy_denoise_nlmeans
Brainlife wrapper app for dipy_denoise_nlmeans workflows.
Language: Shell - Size: 12.7 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
dipy/bl_apps_dipy_denoise_mppca
Brainlife wrapper app for dipy_denoise_mppca workflows.
Language: Shell - Size: 10.7 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
brainlife/app-vistasoft-registration
This app will register a DWI image to a T1w image and rotate the bvecs. Requires a DWI image (with bvals and bvecs) and an T1w image (either ACPC-aligned or native). Will output an aligned DWI image, the rotated bvecs, and the bvals files.
Language: Shell - Size: 44 MB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
brainlife/app-dipy-MAPMRI
Continuous and analytical diffusion signal modelling
Language: Python - Size: 18.6 KB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 1
brainlife/app-datanormalize
(soon to be deprecated) This service round the b-values to the nearest 100. It will also flip the b-vecs around one or more chosen axes (please use Test Gradient Flip app to find out which one needs to be flipped). Some apps requires b-values to be round for their algorithms to work properly.
Language: Matlab - Size: 190 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0