Topic: "identity-by-descent"
magnusdv/ibdsim2
Simulate patterns of DNA sharing between pedigree members
Language: R - Size: 9.35 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 5 - Forks: 2
sunyatin/ASCEND
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
Language: Python - Size: 60 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0
bguo068/ishare
a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.
Language: Rust - Size: 368 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0
tbrunetti/GP3
GWAS Pre-Processing Pipeline
Language: Python - Size: 1.62 MB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 3 - Forks: 1
jlc-christie/plink2merlin
Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).
Language: Python - Size: 18.6 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 3 - Forks: 3
a-thind/IBDVar
A tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.
Language: Shell - Size: 4.79 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
nickbrazeau/discent
Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates
Language: C++ - Size: 21.9 MB - Last synced at: 10 days ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
magnusdv/ibdsim2-legacy
A legacy version of the ibdsim2 app for simulating and visualising genetic sharing between pedigree members.
Language: R - Size: 73.2 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 1 - Forks: 0
bguo068/ibdutils
A python package to facilitate identity-by-descent-based analysis
Language: Python - Size: 35.7 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0
bguo068/posseleff_simulations
Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.
Language: Python - Size: 66.7 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
belowlab/compadre
IBD-based pedigree generation software, built on top of and maximizing utility from the tools PRIMUS and ERSA
Language: Perl - Size: 2.57 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 0
rorycraig337/Chlamydomonas_reinhardtii_population_structure
Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"
Language: Perl - Size: 185 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 1
gmagoon/bIBD
efficient, accurate, and scalable IBD segment detection with unphased genotype data
Language: TeX - Size: 2.63 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
hhuang2018/WGS_analysis
Exploratory analysis for donor-recipient whole genome sequences
Language: R - Size: 368 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 0 - Forks: 0
