Topic: "microbiome-workflow"
grimmlab/MicrobiomeBestPracticeReview
Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
Language: Shell - Size: 13 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 101 - Forks: 36
cafferychen777/MicrobiomeStat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Language: R - Size: 119 MB - Last synced at: 5 days ago - Pushed at: 10 days ago - Stars: 40 - Forks: 5
anwarMZ/CoMW
Comparative Metatranscriptomics Workflow
Language: Python - Size: 175 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 6 - Forks: 3
TomC-93/Tree-Root-Microbiome-Project
The scripts contained in this repository relate directly to the work conducted by the Tree Root Microbiome Project (TRMP) led by Dr Steve Wakelin.
Language: HTML - Size: 1.63 MB - Last synced at: 3 months ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 1
cafferychen777/MicrobiomeStat-Turtorial-Professional-Version
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
Size: 176 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 3 - Forks: 2
Brochado-Kith/microbiome_analysis
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
Language: R - Size: 1.34 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 0
biocorecrg/microbiome_procedures
Mothur procedures for 16S and ITS analysis
Language: R - Size: 124 MB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 6
cafferychen777/MicrobiomeStat-Shiny
A Shiny interface for the MicrobiomeStat R package, designed to facilitate analysis and visualization of microbiome data.
Language: R - Size: 1.1 MB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1
DOieGYuan/gone
Use one command to perform genome-centric metagenomics using state-of-the-art methods
Language: Shell - Size: 43 KB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
ahmedmoustafa/ALS
Analysis of the gut microbiome of Amyotrophic Lateral Sclerosis (ALS) patients using the DADA2 workflow
Language: Jupyter Notebook - Size: 3.62 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
mdelacuba/script-repo-2024
Script repository related to the data processing and analyses of the study "Evidence of habitat specificity in sponge microbiomes from Antarctica"
Language: R - Size: 97.7 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
hermidalc/dragonfish
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
Language: Python - Size: 9.28 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
AlexUmbach/AOViz
short-read amplicon data visualization suite
Language: R - Size: 12.1 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
mschemmel/corrnet
Scripts to convert correlation and p-value matrices to edge list and network
Language: Python - Size: 353 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
natmurad/amplicon16S
Analysis for amplicon data
Language: Jupyter Notebook - Size: 134 KB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
jjcolgan/Bodke-Script
Modified dada2 script, used for master's thesis project. Takes fast2 files and outputs ASV table, taxonomy table, phylogenetic tree, and input files for PICRUSt2
Size: 3.91 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
glickmac/Microbiome_Demo
A repository containing a demo microbiome workflow for R and Python
Language: Jupyter Notebook - Size: 127 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 0 - Forks: 0
