Topic: "nuclei-segmentation"
stardist/stardist
StarDist - Object Detection with Star-convex Shapes
Language: Python - Size: 114 MB - Last synced at: 21 days ago - Pushed at: 7 months ago - Stars: 1,013 - Forks: 237
computational-cell-analytics/micro-sam
Segment Anything for Microscopy
Language: Jupyter Notebook - Size: 51.4 MB - Last synced at: about 18 hours ago - Pushed at: about 19 hours ago - Stars: 527 - Forks: 65
okunator/cellseg_models.pytorch
Encoder-Decoder Cell and Nuclei segmentation models
Language: Python - Size: 101 MB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 90 - Forks: 4
mkang315/ASF-YOLO
Official implementation of "ASF-YOLO: A Novel YOLO Model with Attentional Scale Sequence Fusion for Cell Instance Segmentation".
Language: Python - Size: 253 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 46 - Forks: 2
ruchikaverma-iitg/MoNuSeg
This repository contains my implementations of the algorithms which we used for evaluation of the MoNuSeg challenge at MICCAI 2018.
Language: Jupyter Notebook - Size: 2.26 MB - Last synced at: over 1 year ago - Pushed at: almost 4 years ago - Stars: 43 - Forks: 12
stardist/stardist-napari
StarDist plugin for napari
Language: Python - Size: 1.69 MB - Last synced at: 15 days ago - Pushed at: 8 months ago - Stars: 38 - Forks: 11
Mr-TalhaIlyas/TSFD
Nuclei segmentation and classification (Cancer cells)
Language: Jupyter Notebook - Size: 19.9 MB - Last synced at: 24 days ago - Pushed at: 11 months ago - Stars: 23 - Forks: 6
computational-cell-analytics/patho-sam
Segment Anything for Histopathology
Language: Python - Size: 257 KB - Last synced at: 29 days ago - Pushed at: 29 days ago - Stars: 21 - Forks: 1
okunator/cellseg_gsontools
Feature extraction from GEOJson nuclei and tissue segmentation maps
Language: Python - Size: 88.1 MB - Last synced at: about 1 month ago - Pushed at: 9 months ago - Stars: 14 - Forks: 0
cpathology/NucleiSegHE
H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
Language: Python - Size: 10.4 MB - Last synced at: 15 days ago - Pushed at: 9 months ago - Stars: 9 - Forks: 3
zhenqi-he/transnuseg
MICCAI2023 - TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation
Language: Python - Size: 965 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 9 - Forks: 1
boyden/NuHTC
NuHTC: A Hybrid Task Cascade for Nuclei Instance Segmentation and Classification
Language: Python - Size: 33.8 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 8 - Forks: 1
vjgpt/Nuclei-Segmentation-using-Mask-RCNN
The goal is to segment individual nuclei in microscopy images.
Language: Jupyter Notebook - Size: 2.13 MB - Last synced at: 15 days ago - Pushed at: over 6 years ago - Stars: 7 - Forks: 3
QuIIL/Grad_Mix
GradMix for nuclei segmentation and classification in imbalanced pathology image datasets: MICCAI 2022
Language: Jupyter Notebook - Size: 37.2 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1
gustaveroussy/prismtoolbox
Toolbox for histopathology image analysis
Language: Python - Size: 987 KB - Last synced at: 1 day ago - Pushed at: 8 months ago - Stars: 5 - Forks: 0
karvla/histosnet
Predicting breast cancer outcomes using ML.
Language: Jupyter Notebook - Size: 373 MB - Last synced at: almost 2 years ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 1
CVPR-KIT/SAM-Guided-Enhanced-Nuclei-Segmentation
Official Implemenation paper published at MICCAI 2024
Language: Jupyter Notebook - Size: 17.1 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 2 - Forks: 0
CielAl/hovernet_lite
compact version of the official hovernet impl in pytorch
Language: Python - Size: 86.9 KB - Last synced at: 12 months ago - Pushed at: almost 2 years ago - Stars: 2 - Forks: 0
Kaiseem/AD-GAN
pytorch implement of AD-GAN
Language: Python - Size: 1.65 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
MultimodalImagingCenter/MIC-MAQ
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
Language: Java - Size: 12.7 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
hassanlougithub/Nuclei-Segmentation
Nuclei Segmentation using ResUNet
Language: Jupyter Notebook - Size: 767 KB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
vaibhavshukla182/U_Net-for-medical-image-segmentation
Implementation of U_Net architecture for medical image segmentation purpose.
Language: Python - Size: 1.56 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 1 - Forks: 0
aditya-10012002/Nuclei-Segmentation-Using-Stardist
NUCLEI SEGMENTATION USING STARDIST AND PYTHON IN GOOGLE COLAB
Language: Jupyter Notebook - Size: 9.26 MB - Last synced at: 22 days ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
ilyacarey/nuclei
ImageJ scripts for: (a) batch opening confocal files with two channels and merging them and (b) for a batch of confocal images with two channels, identifying nuclei as ROIs using one channel and quantifying the mean pixel intensity of each ROI using the other channel, and outputting results in Excel. Requirements and assumptions are in comments.
Language: ImageJ Macro - Size: 103 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
femartip/Nuclei-Segmentation
Using Deep Learning techniques for nuclei segmentation. Data extracted from Kaggle competition 2018 Data Science Bowl
Language: Jupyter Notebook - Size: 543 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
Atishaysjain/WSI-Nuclear-Segmentation
Performs instance segmentation and classification of nuclei in Multi-Tissue Histology WSIs(generally 100k*100k pixels).
Language: Jupyter Notebook - Size: 137 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1
JanRibasGarriga/WhoIsWho
WhoIsWho is Google Colab-based tool that aims to classify cells based on features related to their nuclei and their neighbours.
Language: Jupyter Notebook - Size: 1.63 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
saeid436/Image-Segmentation-Unet
Nucleia image segmentation with U-net...
Language: Python - Size: 4.88 KB - Last synced at: 11 months ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
tuanle618/image-segmentation
Implementation of image segmentation networks using pytorch.
Language: Jupyter Notebook - Size: 6.96 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0
