ysbecca/py-wsi

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

Language: Jupyter Notebook - Size: 8.24 MB - Last synced at: 12 days ago - Pushed at: about 1 year ago - Stars: 161 - Forks: 91

girder/large_image_wheels

manylinux wheel files for girder/large_image dependencies

Language: Dockerfile - Size: 9.32 GB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 15 - Forks: 4

InsightSoftwareConsortium/ITKIOOpenSlide

An ITK ImageIO module for the OpenSlide library.

Language: C++ - Size: 148 KB - Last synced at: 7 days ago - Pushed at: 4 months ago - Stars: 12 - Forks: 9

BioImageInformatics/gleason_grade

Code for gleason grading a whole slide in 1 minute or less

Language: Jupyter Notebook - Size: 28.6 MB - Last synced at: 30 days ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 6

rendeirolab/wsi

A Python package for the processing of whole slide histopathological images

Language: Python - Size: 45.9 MB - Last synced at: 4 months ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0

aaqdas/wsi-scanner-segmentation

Whole Slide Image Segmentation

Language: Jupyter Notebook - Size: 40.6 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 1

xHeliotrope/slide_classifier

GUI to Classify Pathology Slides for Neural Net Training

Language: Python - Size: 4.27 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

schlauerlauer/openslides-docker

Language: Python - Size: 11.7 KB - Last synced at: 7 days ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0