B-UMMI/chewBBACA

BSR-Based Allele Calling Algorithm

Language: HTML - Size: 75.9 MB - Last synced at: 8 days ago - Pushed at: 2 months ago - Stars: 147 - Forks: 30

JarnoRFB/epysurv

Epidemiological surveillance in Python

Language: Python - Size: 406 KB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 4

BU-ISCIII/taranys

cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

Language: Jupyter Notebook - Size: 5.2 MB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 9 - Forks: 4

anachaba/Healthron

A Disease Outbreak Assistance system using machine learning and Artifitial Intelligence

Language: Python - Size: 242 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 6 - Forks: 1

BU-ISCIII/bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

Language: HTML - Size: 166 MB - Last synced at: 16 days ago - Pushed at: 8 months ago - Stars: 3 - Forks: 0

zahraDehghanian97/CELF

In this repo. , "Cost Effective Lazy Forward Selection" Algorithm is implemented from scratch in python with only numpy library.

Size: 7.04 MB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

uel3/nf-UnO

metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples

Language: Nextflow - Size: 62.8 MB - Last synced at: 29 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0

mcavallaro/SARS-CoV-2-spatiotemporal-surveillance

R scripts used in M Cavallaro, L Dyson, MJ Tildesly, D Todkill & MJ Keeling (2023) Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern. J. R. Soc. Interface. 20: 20230410. 20230410.

Language: R - Size: 80.2 MB - Last synced at: 2 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

geraked/complex-networks

Implementation of Complex Networks Algorithms

Language: Jupyter Notebook - Size: 10.6 MB - Last synced at: 4 months ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0

benjamin-allevius/ProspectiveDetectionChapter

Language: R - Size: 27.3 KB - Last synced at: 2 months ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 0

mcavallaro/rancovr

rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing

Language: R - Size: 148 MB - Last synced at: 2 days ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

jlmassey1991/Outbreak-Detection-Python

Outbreak Detection Code (python and pyspark)

Language: Python - Size: 4.88 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0

Waghati/ebola_prediction_project

A machine learning project focused on predicting genetic shifts in future Ebola outbreaks using genomic data. The project analyzes historical Ebola sequences to forecast potential mutations and viral characteristics, aiding in outbreak preparedness and public health responses.

Size: 4.88 KB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 0 - Forks: 0

babak2/outbreak_analyser

Language: Python - Size: 256 KB - Last synced at: 3 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mcavallaro/outbreak-detection

Software supporting M. Cavallaro, et al., Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease. PLoS Comput Biol 18(11): e1010726 (2022) https://doi.org/10.1371/journal.pcbi.1010726.

Language: R - Size: 24.5 MB - Last synced at: 2 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0