Topic: "pysam"
PlatonB/ld-tools
ld-tools: toolkit for linkage disequilibrium calculation designed to work locally
Language: Python - Size: 1.87 MB - Last synced at: 2 days ago - Pushed at: about 1 year ago - Stars: 4 - Forks: 0
bch-gnome/hpds_annotation
Annotation pipeline for HPDS
Language: Python - Size: 76.2 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 3
etkayapar/bamRefine
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
Language: Python - Size: 4.75 MB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 3 - Forks: 1
quinlan-lab/constraint-tools
Tools to discover natural selection given multiple evolved DNA sequences (e.g., gnomad cohort, or multiple tumor samples)
Language: Jupyter Notebook - Size: 601 MB - Last synced at: about 1 month ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
Deivmercer/pileup
Progetto di Elementi di Bioinformatica, A.A. 2021/2022
Language: Jupyter Notebook - Size: 722 KB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
DasProsad/codon_wise_ABE_editing
Script to quantify codon frequency after ABE-based editing
Language: Python - Size: 10.7 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0
petermchale/genomics-web-app
vue app with flask REST api to process genomic data
Language: Jupyter Notebook - Size: 49.5 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
tombch/basecount
Per-position and summary statistics for BAM files
Language: Python - Size: 94.7 KB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0
awells-uva/capstone_2022
Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.
Language: Jupyter Notebook - Size: 1.81 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
aobermayer4/NGSDataParsing
Various scripts for working with NGS data in file formats such as VCF, BAM/SAM, and JSON
Language: Python - Size: 45.9 KB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0
fpoli/genome-track
Bioinformatics CLI tool to generate WIG tracks from SAM/BAM files
Language: Python - Size: 17.6 KB - Last synced at: about 1 month ago - Pushed at: about 9 years ago - Stars: 0 - Forks: 0
