Topic: "snp-calling"
AmirHoseinSafari/Genotype-collector-and-SNP-dataset-creator
Collecting Genotypes from ENA and make their SNPs
Language: Python - Size: 40 KB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0
shumengjun/UNEAK
Calling SNPs using UNEAK (de novo) pipeline for ponderosa pine
Language: Shell - Size: 36.1 KB - Last synced at: over 1 year ago - Pushed at: over 5 years ago - Stars: 4 - Forks: 0
gmboowa/Klebsiella_pneumoniae_drug_mutations_discovery
This script performs bacterial genomic analysis - such as SNP calling & antibiotic resistance detection in Klebsiella pneumoniae (FastQC, Snippy, AMR gene screening)
Language: Shell - Size: 12.7 KB - Last synced at: 16 days ago - Pushed at: 16 days ago - Stars: 2 - Forks: 2
rbpisupati/nf-haplocaller
Nextflow pipeline for GATK best practices (HaplotypeCaller)
Language: Nextflow - Size: 17.6 KB - Last synced at: 17 days ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 2
bitlab-tech/sequence_analysis_security-study
Security & performance assessment on client-server schemes that perform genomic sequence analysis using different encryption methods
Language: Rust - Size: 258 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
madsondeluna/api_request_NCBI
This repository contains a Python script that queries NCBI to retrieve detailed information about SNPs (Single Nucleotide Polymorphisms) and parses the returned data. The script makes a request to the NCBI API, parses the XML data, and organizes the information into tables using pandas.
Language: Python - Size: 287 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
madsondeluna/getvar_mvp
O GetVar é útil para o auxílio a diagnósticos genéticos e aconselhamentos, permitindo decisões baseadas em dados com respaldo científico, otimizando tempo e servindo de suporte ao sistema de decisão clínico.
Language: HTML - Size: 350 KB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0