tumor-segmentation | Topic | Ecosyste.ms: Repos

Topic: "tumor-segmentation"

MrGiovanni/SyntheticTumors

[CVPR 2023] Label-Free Liver Tumor Segmentation

Language: Python - Size: 75.2 MB - Last synced at: 18 days ago - Pushed at: 4 months ago - Stars: 345 - Forks: 27

sdsubhajitdas/Brain-Tumor-Segmentation

Brain Tumor Segmentation done using U-Net Architecture.

Language: Jupyter Notebook - Size: 37.1 MB - Last synced at: 20 days ago - Pushed at: almost 2 years ago - Stars: 279 - Forks: 63

himashi92/VT-UNet

[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation

Language: Python - Size: 7.89 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 193 - Forks: 30

MarvinLer/tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

Language: Python - Size: 63.1 MB - Last synced at: 8 days ago - Pushed at: over 3 years ago - Stars: 133 - Forks: 34

MrGiovanni/ContinualLearning

[MICCAI 2023] Continual Learning for Abdominal Multi-Organ and Tumor Segmentation

Language: Python - Size: 329 KB - Last synced at: 26 minutes ago - Pushed at: 9 months ago - Stars: 69 - Forks: 9

adityajn105/brain-tumor-segmentation-unet

Implementation of U-Net from paper "U-Net: Convolutional Networks for Biomedical Image Segmentation" to segment tumor in given MRI images.

Language: Jupyter Notebook - Size: 1.18 MB - Last synced at: 13 days ago - Pushed at: over 5 years ago - Stars: 48 - Forks: 20

junqiangchen/BraTS18-Challege

Multimodal Brain Tumor Segmentation Challenge 2018

Language: Python - Size: 1.15 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 46 - Forks: 13

LidiaGarrucho/MAMA-MIA

The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations

Language: Jupyter Notebook - Size: 8.1 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 40 - Forks: 2

MrGiovanni/Pixel2Cancer

[MICCAI 2024] Cellular Automata for Tumor Development - Realistic Synthetic Tumors in Liver, Pancreas, and Kidney

Language: Jupyter Notebook - Size: 69.3 MB - Last synced at: 15 days ago - Pushed at: 2 months ago - Stars: 37 - Forks: 5

chaineypung/CCFBDCI-2021-Ultrasonic-Tumor-Segmentation-Rank1st

This is the source code of the 1st place solution for segmentation task (with Dice 90.32%) in 2021 CCF BDCI challenge.

Language: Python - Size: 2.52 MB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 32 - Forks: 4

pramod-zillella/Pipelined-Tumor-Segmentation

A complete pipelined automatic process for skull stripping and tumor segmentation from Brain MRI using Thresholding.

Language: MATLAB - Size: 25.4 KB - Last synced at: 14 days ago - Pushed at: almost 4 years ago - Stars: 14 - Forks: 0

abeermohamed1/Image-Processing

Image Processing and Computer Vision tasks using OpenCV Python: motion tracking, face detection, tumor segmentation

Language: Python - Size: 21.7 MB - Last synced at: 2 months ago - Pushed at: about 6 years ago - Stars: 14 - Forks: 8

PathologyDataScience/MuTILs_Panoptic

Amgad M, Salgado R, Cooper LA. A panoptic segmentation approach for tumor-infiltrating lymphocyte assessment: development of the MuTILs model and PanopTILs dataset. medRxiv 2022.01.08.22268814.

Language: Python - Size: 174 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 13 - Forks: 4

AHMEDSANA/Binary-Class-Brain-Tumor-Segmentation-Using-UNET

We segmented the Brain tumor using Brats dataset and as we know it is in 3D format we used the slicing method in which we slice the images in 2D form according to its 3 axis and then giving the model for training then combining waits to segment brain tumor. We used UNET model for our segmentation.

Language: Jupyter Notebook - Size: 65.4 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 13 - Forks: 2

mahdizynali/Pytorch-UNet-Brain-Tumor-Detection

simple pytorch unet model for brain tumor detection on MRI tiff images

Language: Python - Size: 3.53 MB - Last synced at: 2 days ago - Pushed at: almost 2 years ago - Stars: 12 - Forks: 0

MungoMeng/Survival-AdaMSS

AdaMSS: Adaptive Multi-Modality Segmentation-to-Survival Learning for Survival Outcome Prediction

Language: Python - Size: 363 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 11 - Forks: 0

parhambt/MRI-brain-tumor-detection

tumor-detection-segmentation-by-parham

Language: Jupyter Notebook - Size: 483 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 0

thavlik/machine-learning-portfolio

Assorted machine learning implementations for medical data.

Language: Python - Size: 28.8 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 1

ches-001/Binary-Segmentation-Network-for-Tumor-Detection-in-MRIs

An approach to tumor detection and segmentation via encoder decoder artificial neural network architecture

Language: Jupyter Notebook - Size: 29 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 9 - Forks: 0

neuronets/ams

Automated meningioma segmentation

Language: Python - Size: 2.51 MB - Last synced at: 2 days ago - Pushed at: over 4 years ago - Stars: 6 - Forks: 2

TheAlphaJas/HiFormer-LITS Fork of amirhossein-kz/HiFormer

Implementation of the LITS dataset on HiFormer architecture

Language: Python - Size: 6.23 MB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 5 - Forks: 0

TheAlphaJas/Liver-Tumor-Seg-Implements

This repository contains codes of various state-of-the-art methods and research papers for Liver Tumor Segmentation

Language: Jupyter Notebook - Size: 63.1 MB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 5 - Forks: 0

mahdizynali/BraTS2020-Tensorflow-Brain-Tumor-Segmentation

implementation of Tensorflow Unet brain tumor segmentation and detection enhanced with attention model on nii datasets

Language: Python - Size: 460 KB - Last synced at: 5 days ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

miladsade96/Optimized-U-Net

Optimized U-Net for Brain Tumor Segmentation

Language: Python - Size: 136 KB - Last synced at: 19 days ago - Pushed at: over 3 years ago - Stars: 5 - Forks: 0

AHMEDSANA/Four-class-Brain-tumor-segmentation.

Language: Python - Size: 43 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 0

javaidiqbal11/Automatic-Brain-Tumor-Segmentation-Python

A model build for the brain tumor segmentation using Brain MRI.

Language: Python - Size: 423 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 4 - Forks: 0

lxaw/mamba-tumor-seg

Segmentation of cancerous tumors using Mamba. Code, resources, and paper provided. We manage to make a small (42k param) model that can segment pretty well.

Language: Jupyter Notebook - Size: 159 MB - Last synced at: 9 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 0

aysekonus/BrainTumorSegmentation

"Derin Öğrenme Teknolojisi ile Beyin Tümörü Tespiti ve Segmentasyonu" konusu ele alınmış olup, tümörü kolaylıkla ve yüksek doğrulukta tespit edebilen bir bilgisayar destekli tümör tespit sistemi geliştirilmiştir.

Language: Jupyter Notebook - Size: 6.07 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

harveyphm/brain-tumor-detection

Brain Tumor Detection Project with HaarCascade, Convolution Neural Network and OpenCV

Language: Jupyter Notebook - Size: 7.71 MB - Last synced at: 12 months ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

RichardObi/pre_post_synthesis

Official repository for "Pre- to Post-Contrast Breast MRI Synthesis for Enhanced Tumour Segmentation"

Language: Python - Size: 134 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 1

ddayzzz/clara_demo

Some codes based on NVIDIA Clara SDK

Language: Jupyter Notebook - Size: 6.51 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

mahdizynali/Decathlon-lung-tumor-segmentation

Decathlon lung tumor segmentation with segnet model

Language: Python - Size: 9.77 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0

marcotallone/deep-learning-project

A deep learning project for brain tumor classification and segmentation on MRI images using CNN, U-Net, and VIT models.

Language: Jupyter Notebook - Size: 554 MB - Last synced at: about 2 months ago - Pushed at: 5 months ago - Stars: 1 - Forks: 0

Skygers/Multiclass-U-Net-for-liver-tumor-segmentation

Liver Tumor Detection using Multiclass Semantic Segmentation with U-Net Model Architecture. CT-Scan images processed with Window Leveling and Window Blending Method, also CT-Scan Mask processed with One Hot Semantic Segmentation (OHESS)

Language: Jupyter Notebook - Size: 2.93 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

Yazdi9/Kidney_Tissue_Segmentation

Kidney Tumor Segmentation

Language: Jupyter Notebook - Size: 538 MB - Last synced at: 8 months ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

ajulyav/FederatedLearning_Demo

PROOF OF CONCEPT OF THE FEDERATED LEARNING PLATFORM

Size: 2.23 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 1

Thomas-JHR/Biomedical-Image-and-Signal-Processing

Introduction for biomedical image and signal processing

Language: MATLAB - Size: 2.87 MB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0

Computational-Imaging-LAB/T2-Hyp-Segmentor

This repo is for segmentation of T2 hyp regions in gliomas.

Language: Python - Size: 141 MB - Last synced at: about 2 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

morteza89/Brain-Tumor-Segmentation

In this project I'm going to segment Tumor in MRI brain Images with a UNET which is based on Keras. The dataset is available online on Kaggle, and the algorithm provided 99% accuracy with a validation loss of 0.11 in just 10 epochs.

Language: Python - Size: 15.6 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0

manideep03/Brain-Tumor-Segmentation

Using deep learning and computer vision techniques to segment tumors in brain MRI images using UNet.

Language: Jupyter Notebook - Size: 5.57 MB - Last synced at: almost 2 years ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0

artorg-unibe-ch/qam

Library to compute 3D surface-distances for evaluating liver ablation/tumor completeness based on segmentation images.

Language: Python - Size: 9.3 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 2

paoloinglese/ion_colocalization

Scripts used for the paper Inglese, P., Correia, G., Pruski, P., Glen, R. C., & Takats, Z. (2019). Colocalization features for classification of tumors using desorption electrospray ionization mass spectrometry imaging. Analytical chemistry.

Language: R - Size: 68.4 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0

GaganHeer/mri-python-processing Fork of danielelisi/mri-python-processing

Digital Images Processing and Segmentation for Brain Tumor MRI

Language: HTML - Size: 9.28 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 1 - Forks: 0

psweens/Predict-RSOM-ROI

Script to run train 3D CNN to predict tumour region-of-interest from 3D RSOM images.

Language: Python - Size: 399 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

VuTrong826/YOLOv8-Brain-Tumor-Segmentation

Brain tumor segmentation using YOLO architecture for fast and accurate detection.

Language: Python - Size: 161 MB - Last synced at: 23 days ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

Aadityaza/3d-uet-for-Brain-MRI-Segmentation

Language: Jupyter Notebook - Size: 40.4 MB - Last synced at: 19 days ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

abwahab175/mri-report-generator

MRI Report Generation and Tumor Segmentation with Streamlit A Streamlit application that processes MRI images to segment tumors using YOLOv8 and generates comprehensive PDF reports with AI-powered analysis from Google Gemini. Ideal for radiologists and healthcare professionals needing quick and accurate report generation from MRI data.

Size: 3.91 KB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0

ejaj/brain-tumor-segmentation

Brain Tumor Segmentation with 3D UNET

Language: Python - Size: 11.7 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 0 - Forks: 0

YueminGong/ResUnet_liver_tumor_segmentation

liver_tumor_segment

Language: Python - Size: 21.5 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

argaja10/Liver-tumor-segmentation

This project explores various image analysis techniques to segment liver tumor in CT scans.

Language: Jupyter Notebook - Size: 3.6 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

repo-bilalnaeem/Brain-Segmentation

This project focuses on the segmentation of brain tumors using the Brain Tumor Segmentation (BRATs) dataset. The primary goal was to develop a deep learning model capable of accurately identifying and segmenting tumor regions in MRI scans.

Language: Jupyter Notebook - Size: 129 MB - Last synced at: 2 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

x-xaie/TermProjectG7 Fork of pabloguineab/TermProjectG7

NeuroSense is a user-friendly web application to classify brain tumors.

Language: Jupyter Notebook - Size: 42.1 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0